cluster # 6565

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Oryza sativa
cluster # 6565 cluster # 6565 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6565#0 length = 576 sequences # 3

consensus_6565#1 length = 185 sequences # 1

consensusID : consensus_6565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 576
fasta sequence

                              [CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCAGCGGCGGCGGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAACGTGCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF339118             [CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCAGCGGCGGCAGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK107731             [                    CAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCAGCGGCGGCGGCGCCGGAGAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGG                                                        ]
[+] EMBL AU093214             [                                                                CGNCGGCGCCGGACAACGGCCCGGTGGGGTGCCTGGCGTCGNCGGTGNAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAACGTGCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA]




>consensus_6565#0
CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCA
GCGGCGGCGGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCCG
ATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCTA
GTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCGCCGTCTCGCTGCCGCCGCCGATGCCG
GTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTTGT
GGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGGTC
AGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAGGT
TCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATATT
CCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAACGT
GCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [GNGNCACGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGGCGATT]

[+] EMBL OSC2544A             [GNGNCACGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGAGGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTTCGATCTAGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGGCGATT]




>consensus_6565#1
GNGNCACGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGA
GGGCCCGATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTT
CGATCTAGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGG
CGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6565#0      CCTCTTCTCTCACCTTTCAGCAACAATGGCGCAGCAGTAGTGGCCTGGATGGCGGCGGCA 60
consensus_6565#1      ------------------------------------------------------GNGNCA 6
                                                                            * * **

consensus_6565#0      -GCGGCGGCGGCGCCGGACAACGGCGCGGTGGGGTGCCTGGCGTCGGCGGTGGAGGGCCC 119
consensus_6565#1      CGCGGCGGCGGCGCNGNACAACGNNGGNTGNGGGTGCCTGGCGTCGGCGGTGGAGGGCCC 66
                       ************* * ******  *     *****************************

consensus_6565#0      GATAACGTGAATGGCAATGGGCCAACACCCCTGACCTCTGCTCTGCTGCAGTTTCGATCT 179
consensus_6565#1      GATAACGTGAATGGCAATGGGCCAACACCCCTAACCTCTGCTCTGCTGCAGTTTCGATCT 126
                      ******************************** ***************************

consensus_6565#0      AGTTCTTTTTCTTTTTCCGCGCATCTCGCTCCTCG-CCGTCTCGCTGCCGCCGCCGATGC 238
consensus_6565#1      AGTTCTTTTTCTTTTTCCGNGCATCTNGTTCCTNGGCCGTCTNGTTGCCGNCGGCGATT- 185
                      ******************* ****** * **** * ****** * ***** ** ****  

consensus_6565#0      CGGTCCGCGTTTTCTCCGTCCCTTCCATTGCCGCCGTTCCTCTCGGCCGCGCCTCTGCTT 298
consensus_6565#1      ------------------------------------------------------------
                                                                                  

consensus_6565#0      GTGGTGCCACGTTCTCCAGCGCCGATGCGGCGGCTGTCTGCAGATACGCCAGCCGTTTGG 358
consensus_6565#1      ------------------------------------------------------------
                                                                                  

consensus_6565#0      TCAGGCACAGCAATCTCCGGCGGCAAAGGTTCTTGGTGATCTGCCCTACGGATTGTTCAG 418
consensus_6565#1      ------------------------------------------------------------
                                                                                  

consensus_6565#0      GTTCTCACTGTTTCCCTGTTGTTATCTGTTACTACTACCATTTTACCGCATTATTGTATA 478
consensus_6565#1      ------------------------------------------------------------
                                                                                  

consensus_6565#0      TTCCCCTGATTCGTTAATCTAGGGAAGAGGTAGTAGAACTGGAACACAATTCAATTCAAC 538
consensus_6565#1      ------------------------------------------------------------
                                                                                  

consensus_6565#0      GTGCTGAAATGCACCGTCAAAAAAAAAAAAAAAAAAAA 576
consensus_6565#1      --------------------------------------