These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [TGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCTGCTGTTGTGCACTCTGCCCAATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAGACTCCTGCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTCGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGCGGAGGGTGGTG] [+] EMBL CB627017 [TGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCTGCTGTTGTGCACTCTGCCCAATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAGACTCCTGCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTCGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGCGGAGGGTGGTG] consensusID : consensus_6569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [AAGGATTGTTAGAAGCATTCATTCTCAACACACAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCAATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAAATGGATGTGGCTGTGGAGGTGNGTGGTGGTGGTGCTCNTGGTTGCA] [+] EMBL CB641081 [AAGGATTGTTAGAAGCATTCATTCTCAACACACAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCAATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAAATG ] [+] EMBL CB663166 [ AACCAATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCAATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTCTGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGAGATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCAATCGGTTGCAAGACAGACTCCTGAGTCTGATGGTAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGAATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAATGTTTGAGATGGATGTGGCTGTGGAGGTGNGTGGTGGTGGTGCTCNTGGTTGCA] consensusID : consensus_6569#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTCATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGCCCCACGCGTCCGCCCACGCGTCCGCGG] [-] EMBL BQ906744 [TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTCATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAGGATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCAATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGATCGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAGAGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCTCCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGCCCCACGCGTCCGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6569#0 ------------------------------------------------------------ consensus_6569#1 ------------------------------------------------------------ consensus_6569#2 TTTTTTTTTCAGTTCATATTCTTGGATTCTAAACAATTTTATTTGGTCAGAAAACAATTC 60 consensus_6569#0 ---------------------------------------TGGCATCTCGTGATTTTAAAG 21 consensus_6569#1 ---------------------------------------------------------AAG 3 consensus_6569#2 ATACCGTACGGTCTTCAGCTATCCAAATTTCTGATAAAGTGGCATCTCGTGATTTTAAAG 120 *** consensus_6569#0 GATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCA 81 consensus_6569#1 GATTGTTAGAAGCATTCATTCTCAACACACA--GCCCATGTAGGATGAGCTTATGAACCA 61 consensus_6569#2 GATTGTTAGAAGCATTCATTCTCAACACACATAGCCCATGTAGGATGAGCTTATGAACCA 180 ******************************* *************************** consensus_6569#0 ATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGAT 141 consensus_6569#1 ATTTAATATCGGTCAAAAACTGAAAGCAACACTACACATATTGCACGCATTGCCAAGGAT 121 consensus_6569#2 ATTTAATATCGGTCAAAAACTGACAGCAACACTACACATATTGCACGCATTGCCAAGGAT 240 *********************** ************************************ consensus_6569#0 CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG 201 consensus_6569#1 CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG 181 consensus_6569#2 CGCAACAATAAATACCTCATCATGTTTGCCCCTAGCTCACAGATATGAACAAAGAAAAAG 300 ************************************************************ consensus_6569#0 AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT 261 consensus_6569#1 AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT 241 consensus_6569#2 AGAAGACTTAATTTGTCATTGGCAACATGGTGATCAAGCAGGCACATCGCACCGGCGCCT 360 ************************************************************ consensus_6569#0 CCCATTTCAGTTATAGCTGGCCA-ATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTC 320 consensus_6569#1 CCCATTTCAGTTATAGCTGGCCA-ATACGATCCTGAAGCATCTGCATGAGTTTGGGGTTC 300 consensus_6569#2 CCCATTTCAGTTATAGCTGGCCACATACGATCCTGAAGCATCTGC-----CCCACGCGTC 415 *********************** ********************* * ** consensus_6569#0 TGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGA 380 consensus_6569#1 TGCTCCAAAAGCTTACAAAGCTTGTCACGATCACTCAACAGACTCTGAATAGCTTCTGGA 360 consensus_6569#2 CGC-CCACGCGTCCGCGG------------------------------------------ 432 ** *** * * consensus_6569#0 GATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCGTCTGCTGTTGTGCACTCTGCCCA 440 consensus_6569#1 GATGAAAAAAAATGATTTAAATTCATCCCAGAGTCCATCTGCTGTTGTGCACTCTGCCCA 420 consensus_6569#2 ------------------------------------------------------------ consensus_6569#0 ATCGGTTGTTCAGACACATGCCCAATCGGTTGCAAGACAGACTCCTGCTGAGTCTGATGG 500 consensus_6569#1 ATCGGTTG------------------------CAAGACAGACTCCT---GAGTCTGATGG 453 consensus_6569#2 ------------------------------------------------------------ consensus_6569#0 TAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGA 560 consensus_6569#1 TAAAATTGTAGTTGTGGAACATGAAGCTGGTTCGGAAACTGCAATGGCACCTGAGGCTGA 513 consensus_6569#2 ------------------------------------------------------------ consensus_6569#0 ATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTCGAAGAGAACCTTGGAAT 620 consensus_6569#1 ATAGTATTTAGTGGATATGGCATTGGCTGCTCTTGTGGTTGTTGAAGAGAACCTTGGAAT 573 consensus_6569#2 ------------------------------------------------------------ consensus_6569#0 GTTTGAGATGGATGTGGCTGCGGAGGGTGGTG--------------------- 652 consensus_6569#1 GTTTGAAATGGATGTGGCTGTGGAGGTGNGTGGTGGTGGTGCTCNTGGTTGCA 626 consensus_6569#2 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||