cluster # 6572

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6572 cluster # 6572 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6572#0 length = 695 sequences # 2

consensus_6572#1 length = 274 sequences # 2

consensusID : consensus_6572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence

                              [GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCGGCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAGGTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAGGCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTC-TTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTTGTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGAACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCTACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGGAGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC]

[+] EMBL AK108619             [GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCGGCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAGGTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAGGCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTC TTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTTGTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGAACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCTACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGGAGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC]
[+] EMBL CK085038             [                                                                                                                                                                          CTAGGCGGAGGCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTTGTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGAACTCAAAAGTTCTTCGTCTCGTTGATTGGAT                                                                                                                            ]




>consensus_6572#0
GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCG
GCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAG
GTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAG
GCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTG
GACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCG
TTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTG
GCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCT
TTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTT
GTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGA
ACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCT
ACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGG
AGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC

consensusID : consensus_6572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 274
fasta sequence

                              [TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTNCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAAAAAAA]

[+] EMBL AU066183             [TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTNCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAAAAAAA]
[+] EMBL AU161821             [TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAAAA   ]




>consensus_6572#1
TGCTGGAGGAGGCCTTGGCCATGGCGGTGGACTAGGTGGCGGACTCGGGCACGGCGGCGG
CCTTGGTGGGGGCGGCTTCGGCGTCGGCGTTGGTGTCGGCGTTGGCGTTGGTTTTGGTGG
TGGTGCCGGTNCTGGTGGTGGCGCGGGTGGCGGCGGACGTTAAGACATCGACGTGGCGCA
CGCACGGTCTGCTAGTGTTTAAACACTCTTTTTTCCTAAAAATTAAAGAAGCTTATGGTA
TTCAGTATTAGTGTGCAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6572#0      GAGGTGGCGCTGGCGGAGGCGGCGGTCTTGGTGGTGGTGGTGGCGGCGGCATGGGTGGCG 60
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      GCGGAGGAGGTGGAATGGGTGGTGGCGCCGGTGGAGGTTTCGGTGGTGGAGCTGGCGGAG 120
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      GTGCTGGTCAAGGCGGCAGCGGCGGTCTAGGCGGAGGCGGTGGCGGTGGCCTAGGCGGAG 180
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      GCGGTGGCGCCGGTGGTGGCTTGGGTGGTGGTGCTGGAGGAGGCCTTGGCCATGGCGGTG 240
consensus_6572#1      -------------------------------TGCTGGAGGAGGCCTTGGCCATGGCGGTG 29
                                                     *****************************

consensus_6572#0      GACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCG 300
consensus_6572#1      GACTAGGTGGCGGACTCGGGCACGGCGGCGGCCTTGGTGGGGGCGGCTTCGGCGTCGGCG 89
                      ************************************************************

consensus_6572#0      TTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTGCTGGTGGTGGCGCGGGTG 360
consensus_6572#1      TTGGTGTCGGCGTTGGCGTTGGTTTTGGTGGTGGTGCCGGTNCTGGTGGTGGCGCGGGTG 149
                      ***************************************** ******************

consensus_6572#0      GCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCT 420
consensus_6572#1      GCGGCGGACGTTAAGACATCGACGTGGCGCACGCACGGTCTGCTAGTGTTTAAACACTCT 209
                      ************************************************************

consensus_6572#0      TTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAATCGTGTGGTTT 480
consensus_6572#1      TTTTTCCTAAAAATTAAAGAAGCTTATGGTATTCAGTATTAGTGTGCAAAAAAAAAAAAA 269
                      *************************************************           

consensus_6572#0      GTCTATGAATTAGGGGGTGTCTAATTGGTGGTGATTATTGCTGTCCTGTACTTAGGGCGA 540
consensus_6572#1      AAAAA------------------------------------------------------- 274
                          *                                                       

consensus_6572#0      ACTCAAAAGTTCTTCGTCTCGTTGATTGGATAAAACTCCAACTACATGTAATAATAATCT 600
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      ACGTAAAAGAGATGCAAAGTCTAATAATAGTAAACCGTACTATTCAAGTGTAATATTCGG 660
consensus_6572#1      ------------------------------------------------------------
                                                                                  

consensus_6572#0      AGTACAGTTTGGGCATTGTCCATGCTAAAGTATTC 695
consensus_6572#1      -----------------------------------