These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence [CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATG] [+] EMBL AK070265 [CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATG] [+] EMBL CA767312 [ CTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATG] consensusID : consensus_6576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 583 fasta sequence [GAAAATTCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGACCACCCCCGCGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATNTCTTATGA] [+] EMBL CB636489 [GAAAATTCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGACCACCCCCGCGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATNTCTTATG ] [-] EMBL CB636490 [ GAATGGCTTGTTTTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTTTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6576#0 CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGG 60 consensus_6576#1 ------------------------------------GAAAAT-TCCGGCCGACTCGCCGG 23 ****** ***************** consensus_6576#0 AGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCG 120 consensus_6576#1 AGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCG 83 ************************************************************ consensus_6576#0 TGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCG---------- 170 consensus_6576#1 TGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGACCACCCCCG 143 ************************************************** consensus_6576#0 -----CCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCG 225 consensus_6576#1 CGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCG 203 ******************************************************* consensus_6576#0 CAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTC 285 consensus_6576#1 CAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTC 263 ************************************************************ consensus_6576#0 ACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTT 345 consensus_6576#1 ACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTT 323 ************************************************************ consensus_6576#0 CTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGA 405 consensus_6576#1 CTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGA 383 ************************************************************ consensus_6576#0 GGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATT 465 consensus_6576#1 GGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATT 443 ************************************************************ consensus_6576#0 CCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATT 525 consensus_6576#1 CCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATT 503 ************************************************************ consensus_6576#0 GGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGT 585 consensus_6576#1 GGACCAATTCGTGTAGTTTCCAGCGAGCAG-------CCGTGTATCGTGCCATGAGAAGT 556 ****************************** *********************** consensus_6576#0 GATAATAGGATGAAGTATTTCTTATG- 611 consensus_6576#1 GATAATAGGATGAAGTATNTCTTATGA 583 ****************** ******* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||