|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2209 fasta sequence
[CGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAGGGTTTACCACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGAGCTCTCCTCAACTGCGCCGCCGAGAGCCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACAGGCTGATCTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTGTTCTCACTGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTGTGGTTTGTGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAAGGGCGCCGACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAATTCAGTATCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAGCAGCTTACATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACTAGCTGTTGACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCTTTATATTGCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTTGCAGATAAGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACTTGCGGAACATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTACAGAACGTTTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGCTAGCATGAAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGCACTATATATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGTTGTGCATGTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTCGGGTAGCTTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAAAATTTCACCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGCTCATGGACTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGGTGGCTCTGATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAATGCTAAAGGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGAATCTGATGTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTCGACAATTCCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGAAGTTAAAAATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGAGGTTGATGGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGAAATGAATAAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGCAGCTAGAGGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATA-CCCGATATATCAATGCT-GGGTAGAATTGTTACAATTTTA-TTTGTGTGTGTA-TGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGCTGTATATTAAAACAGGCCTCGAAGAAAAAGGAAAAT]
[+] EMBL AK099553 [CGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAGGGTTTACCACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGAGCTCTCCTCAACTGCGCCGCCGAGAGCCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACAGGCTGATCTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTGTTCTCACTGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTGTGGTTTGTGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAAGGGCGCCGACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAATTCAGTATCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAGCAGCTTACATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACTAGCTGTTGACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCTTTATATTGCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTTGCAGATAAGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACTTGCGGAACATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTACAGAACGTTTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGCTAGCATGAAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGCACTATATATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGTTGTGCATGTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTCGGGTAGCTTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAAAATTTCACCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGCTCATGGACTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGGTGGCTCTGATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAATGCTAAAGGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGAATCTGATGTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTCGACAATTCCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGAAGTTAAAAATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGAGGTTGATGGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGAAATGAATAAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGCAGCTAGAGGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAAACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATA CCCGATATATCAATGCT GGGTAGAATTGTTACAATTTTA TTTGTGTGTGTA TGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGCTGTATATTAAAACAGGCCTCGAAGAAAAAGGAAAAT]
[+] EMBL OS1321811 [ AAGATGGCAAGAACGCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTTGGATCGAAGA CAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGCAAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTG AACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTNC GCGGTTATGATGGTGTTGATTTTTAATA CCCGATATATCAATACTGGGGTAGGATTGTTACAATTTTATTTTGTGNGTTTATTGGC ACCATTATCA ]
[+] EMBL AU223336 [ AGATGAAGATGGCAAAGCAGATAAANAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAAACATTNGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATGATGGTGTTGATTTTTAATACCCCGATATATCAATGCT GGGTAGAATTGTTACAATTTTA TTTGTGTGTGTA TGGCAACAATTATCAATTTTACATGAATAGTTNTGATTAGTTGAAAAAAAaaaaaa ]
consensusID : consensus_6597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[AGGTGGTTATNATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATNATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTGTTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGTTGTATATTAAAAAAAATATAAAAGGTTACAAGTGGGCGNCGCCCCNTGG]
[+] EMBL AU065980 [AGGTGGTTATNATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCCTACGGCGATTATNATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTGTTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGATTAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTGATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACCTATACTTGCAAGTTGTATATTAAAAAAAATATAAAAGGTTACAAGTGGGCGNCGCCCCNTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6597#0 CGAGCCGCGCGGCCGAGTGCAAAAAGGAAAAATATCGGTCCCCGCGAGCTAGGGTTTACC 60
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 ACCCCCCCCTCGTCCACCTCTCTCTCTCTCCGGGTGCCCACGCCGGCGGCGAGCTCTCCT 120
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CAACTGCGCCGCCGAGAGCCCCCCCCGCCCCCCCTGTTCGTGGGGGAAGTACAGGCTGAT 180
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CTTAGTTGGGGGGGTATACTCTGCGGTCTACTTGCTACTCCAGCAATGTATTGTTCTCAC 240
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 TGTCAAGATAACTGCCCCGTCGTAAAGGACCCTGACAAAAACTACACATGTTGTGGTTTG 300
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 TGTGGGAAGGTTCTTGATGATCAGGTTTACGATGGTGAGCCAACTTTCCAAAAGGGCGCC 360
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GACGGGCAGGCCCGGTTGGCTGGTAGTATTCTATCAAGCATTGAGAGTGGTAATTCAGTA 420
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 TCCCATGAAAGAACTATAAATAAAGGAAGAGAGGAGATTAGGCAGATTGTCAGCAGCTTA 480
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CATGTGGCTGGTGGAGATACTATTATTAGCATGGCTCATCGCTATTATACACTAGCTGTT 540
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GACAAGAATTTTACAAGGGGCCGTCGAACAACTCATGTTGCTGCTGCTTGCCTTTATATT 600
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GCCTGCCGGCAAAGTAAAAAGGCATATCTTCTTATTGATTTCTCGGACCATTTGCAGATA 660
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 AGTGTTTATGTCCTAGGTGCTGTTTTTCTGCAGCTTTGCCAAGTTTTGCTACTTGCGGAA 720
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CATCCAGTTATCCAAAAGCTCATCGACCCCAGCCTTTTCATACATCGTTTTACAGAACGT 780
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 TTACTGGGGAAGAGGGACAATGCCGTATCAGATACGGCTTTACGCATTGTAGCTAGCATG 840
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 AAGCGAGACTGGATGCAGACTGGGAGGAAACCAAGTGGATTGTGTGGTGCAGCACTATAT 900
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 ATCGCTGCTCTCTCTCATGGATATGATTATACCAAGGCAGATATTGTTGCTGTTGTGCAT 960
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GTTTGCGAGGCAACACTAACTAAGCGCTTGATAGAGTTTGAAAATACAGATTCGGGTAGC 1020
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 TTAACGATTGAAGAATTTTTGGCAAAGGCTGATGAACAAGTGCTTGTTACTAAAATTTCA 1080
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CCAAAGTCTGGAGAAGTACTTTGCAAGCACAAGGATAAAGCTGAGCATTTTGCTCATGGA 1140
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CTCTGTGAAAAATGCTACAACAAATTTATGAAACTGTCTGGTGGACTGGAGGGTGGCTCT 1200
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GATCCTCCAGCTTTCCAACGAGCTGAAAAACAAAGGTTGGAGGCTGCTAAAAATGCTAAA 1260
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GGAACTGCTGCATCTAAAGAGGCAGCACTGGAATCAGTTTGTGAGGCACGCGAATCTGAT 1320
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GTTGAGAATAACATTACGACACCGCCAAAGAATATAATTGGAGATAAGCATTCGACAATT 1380
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 CCTTCTGTGAAAGTTGCTGGTGATTCTGTAGCTACAGAAGATCCTGAAGGGGAAGTTAAA 1440
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 AATGATAAAGCAGATGAAGGTCCTGAAAGTCTCTCTGATATTGATGATGCGGAGGTTGAT 1500
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GGGTACCTTCACAACGAGGAAGAAACACAGTACAAAAAAATTATCTGGGAGGAAATGAAT 1560
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 AAAGAGTACCTTGAGGAACAAGCAGCAAAAGCAGCATTAGCAGCTGAGCTGGCAGCTAGA 1620
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GGAGTGGTTGTGGAAGAGGGGAAGAGGAAAAGAAGAAGACATAATGAAGATGGCAAGAAC 1680
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GCAACACCCGCTCAAACACCAGCAGAAGCAACACAGAACATGTTGAAGCGGAAGAGACTT 1740
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 GGATCGAAGATCAATGATGAAGCTGTTAACAAACTGTACAATACCAAAGATGAAGATGGC 1800
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 AAAGCAGATAAAGAGATGGACTTCAACGATGAGTATGGACAGGACACAGGTGATGGTGAA 1860
consensus_6597#1 ------------------------------------------------------------
consensus_6597#0 ACATTCGAAGGTGGTTATGATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCC 1920
consensus_6597#1 --------AGGTGGTTATNATTATCCTGATTACAACTATGATGGCTATGGTGATGGAGCC 52
********** *****************************************
consensus_6597#0 TACGGCGATTATGATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTG 1980
consensus_6597#1 TACGGCGATTATNATGGTGTTGATTTTTAATACCCGATATATCAATGCTGGGTAGAATTG 112
************ ***********************************************
consensus_6597#0 TTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGAT 2040
consensus_6597#1 TTACAATTTTATTTGTGTGTGTATGGCAACAATTATCAATTTTACATGAATAGTTCTGAT 172
************************************************************
consensus_6597#0 TAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTG 2100
consensus_6597#1 TAGTTGACGAAAACGGAGTTAATCAGTACTCAGTAGACAGTATAGCAGTGTAGCTCGTTG 232
************************************************************
consensus_6597#0 ATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACC 2160
consensus_6597#1 ATTTCTCTGGTGATATGTTGAGAAGCTGTTGTAGTAACTGTATTATTTCATTCAGCGACC 292
************************************************************
consensus_6597#0 TATACTTGCAAGCTGTATATTAAAACAGGCCTCGAAGA----AAAAGGAAAAT------- 2209
consensus_6597#1 TATACTTGCAAGTTGTATATTAAAAAAAATATAAAAGGTTACAAGTGGGCGNCGCCCCNT 352
************ ************ * * *** ** **
consensus_6597#0 --
consensus_6597#1 GG 354
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||