cluster # 6617

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Oryza sativa
cluster # 6617 cluster # 6617 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6617#0 length = 876 sequences # 2

consensus_6617#1 length = 453 sequences # 1
consensus_6617#2 length = 429 sequences # 1

consensusID : consensus_6617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 876
fasta sequence

                              [ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTCCAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCGTGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACAATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGATAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGGATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGGATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGCCAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCGCGCTGTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCG-CCGCCCTCTCGCCGAAGGTCAACCCAATG-AGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAA-CCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAA]

[+] EMBL AK059635             [ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTCCAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCGTGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACAATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGATAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGGATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGGATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGCCAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCGCGCTGTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCG CCGCCCTCTCGCCGAAGGTCAACCCAATG AGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAA CCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATT                   ]
[-] EMBL CF307652             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGNCCG CCTCTCGCCGAAGGTCAACCCAATGAAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAA]




>consensus_6617#0
ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTC
CAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCG
TGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACA
ATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGA
TAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGG
ATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGG
ATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGC
CAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCGCGCTGTCAAGAAGCAGC
CGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACG
ACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGTG
AGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGT
CGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTG
TTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAA
CCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGG
TGAATATGAATATGATTCGATTCGTTTAAAAAAAAA

consensusID : consensus_6617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CGAGCTCGTSCATTCGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGACAAGGTGTAATATGAATATGWTTCGWTTCGTTTA]

[+] EMBL BE229598             [CGAGCTCGTSCATTCGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAAGCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGACAAGGTGTAATATGAATATGWTTCGWTTCGTTTA]




>consensus_6617#1
CGAGCTCGTSCATTCGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAA
GCAGCCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACT
GAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGTCAACCCAATGAGCCCTAACTACATC
CGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGT
TTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGC
TCTGTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGT
GTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGAC
AAGGTGTAATATGAATATGWTTCGWTTCGTTTA

consensusID : consensus_6617#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [TGGACTGAAGGAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTTAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACTGTCATGCCG]

[+] EMBL CF307653             [TGGACTGAAGGAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTTAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACTGTCATGCCG]




>consensus_6617#2
TGGACTGAAGGAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTC
GGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAA
CTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTT
CGCAGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATA
GTCTGGCTCTGTTCTGTCTGTAAATTTGCTAGCTTAGGCTGGTTCTGCAAACCTAAACTC
TGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTG
GCCAACAAGGTGAATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACT
GTCATGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6617#0      ACCCTTCAGCATGGGGAGCGATAGAACCTCCAATGTGCGACGTCAGAGTGACCGACAGTC 60
consensus_6617#1      ------------------------------------------------------------
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      CAGTATCCTCGCAGCTTTCACCTATCGTCTGCCAAGTTGTGGACGATGCCAAGTTGCCCG 120
consensus_6617#1      ------------------------------------------------------------
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      TGTCGGAGCAGCTGAAATCATGCAATGCTTTGGAGGCAGCTGATGAGAACAAGGAGAACA 180
consensus_6617#1      ------------------------------------------------------------
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      ATGCTTCTGGACAAGACGGCCTGCTTGAAGTCTACATCAAATGGGAGTCCGGCCATCTGA 240
consensus_6617#1      ------------------------------------------------------------
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      TAAAAGGTCTGAAATTGCTGAGCAACTCGTGTCTTTCTGACCTGAGAAAGCTCTTGGAGG 300
consensus_6617#1      ------------------------------------------------------------
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      ATCACTTCGAAGAAGCAGGGAGCAAGCAGCAGCAGCAGTTCACCTTCCTCCTTCTCGGGG 360
consensus_6617#1      ------------------------------------------------------------
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      ATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGC 420
consensus_6617#1      ----------------------------------------------------CGAGCTCG 8
consensus_6617#2      ------------------------------------------------------------
                                                                                  

consensus_6617#0      CAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCTTGCG-CGCTGTCAAGAAGCAG 479
consensus_6617#1      TSCATT----CGGCASGCGAAACAGCTACCTAGCCTGCTTGCGGSGCBTTCAAGAAGCAG 64
consensus_6617#2      --------------------------------------------------TGGACTGAAG 10
                                                                              * **

consensus_6617#0      CCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAAC 539
consensus_6617#1      CCGGCGACGGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTGAATTCGGCACTGAAC 124
consensus_6617#2      GAGTAGAAAGAGCAGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAAC 70
                        *  **  *********************************** ***************

consensus_6617#0      GACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGT 599
consensus_6617#1      GACGTGCACCTCGCCGCCCTCTCGCCGAAG-TCAACCCAATGAGCCCTAACTACATCCGT 183
consensus_6617#2      GACGTGCACCTCGCCGCCCTCTCGCCGAAGGTCAACCCAATGAGCCCTAACTACATCCGT 130
                      ****************************** *****************************

consensus_6617#0      GAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTG 659
consensus_6617#1      GAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGTAGGTTTG 243
consensus_6617#2      GAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGCAGGTTTG 190
                      **************************************************** *******

consensus_6617#0      TCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCT 719
consensus_6617#1      TCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCT 303
consensus_6617#2      TCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCT 250
                      ************************************************************

consensus_6617#0      GTTCTGTCTGTAAATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTA 779
consensus_6617#1      GTTCTGTCCGTAAATTTGCTAGCTATAGTCTGGTTCTGCAATCCTAAACTCTGAAGTGTA 363
consensus_6617#2      GTTCTGTCTGTAAATTTGCTAGCT-TAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTA 309
                      ******** *************** *** ************ ******************

consensus_6617#0      ACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAG 839
consensus_6617#1      ACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCGACAAG 423
consensus_6617#2      ACCATGTTACACGAGTGGCTGTGGCTAGACACTGCGGGTCATGCGTCTGTGGCCAACAAG 369
                      ****************************************************** *****

consensus_6617#0      GTG-AATATGAATATGATTCGATTCGTTTAAAAAAAAA---------------------- 876
consensus_6617#1      GTGTAATATGAATATGWTTCGWTTCGTTTA------------------------------ 453
consensus_6617#2      GTG-AATATGAATATGATTCGATTCGTTTAAAAAAAAAAAAAAAAAGACACTGTCATGCC 428
                      *** ************ **** ********                              

consensus_6617#0      -
consensus_6617#1      -
consensus_6617#2      G 429