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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1160 fasta sequence
[AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGC-TGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCAGCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAGGGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCTACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTATATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGACAAGCTGAGAGTGTACCTTGA]
[+] EMBL AK067941 [AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGC TGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCAGCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAGGGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCTACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTATATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGACAAGCTGAGAGTGTACCTTGA]
[+] EMBL OSR3223A [ GAAG GNAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTCCTTTGGGTTGCNATGGTGAGGGGAAGAAGAGCGTNGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTTGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGA ]
[+] EMBL AU173465 [ ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTaaaaaa ]
consensusID : consensus_6622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761567 [AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6622#0 AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGA 60
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 GGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGT 120
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 TGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGAC 180
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 GAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGG 240
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 GACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTGCTGGCTTCGCCGGCGATGTCGGTGGC 300
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 GTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCA 360
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 GCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAG 420
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 GGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCT 480
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 ACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTAT 540
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 ATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGG 600
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 TTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGAT 660
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCC 720
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 TGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCT 780
consensus_6622#1 ------------------------------------------------------------
consensus_6622#0 CGCTGTTCAGGACT-GCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCT 839
consensus_6622#1 ------AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCT 54
*** * ***** ** ************************************
consensus_6622#0 GAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAAT 899
consensus_6622#1 GAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAAT 114
************ ******************* ******************** ******
consensus_6622#0 CTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCA 959
consensus_6622#1 CTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCA 174
********** *********************************** *************
consensus_6622#0 GAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGAT 1019
consensus_6622#1 GAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGAT 234
***** ******* ******* ************************* * **********
consensus_6622#0 GATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTG 1079
consensus_6622#1 GATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTG 294
************** ************* **************************** **
consensus_6622#0 CCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGA 1139
consensus_6622#1 CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 331
*** * ** * * *
consensus_6622#0 CAAGCTGAGAGTGTACCTTGA 1160
consensus_6622#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||