Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6622 cluster # 6622       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6622#0 length = 1160 sequences # 3  
consensus_6622#1 length = 331 sequences # 1  

consensusID : consensus_6622#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1160
fasta sequence
                              [AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGC-TGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCAGCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAGGGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCTACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTATATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGACAAGCTGAGAGTGTACCTTGA]

[+] EMBL AK067941             [AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGC TGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCAGCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAGGGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCTACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTATATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGACAAGCTGAGAGTGTACCTTGA]
[+] EMBL OSR3223A             [                  GAAG GNAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTCCTTTGGGTTGCNATGGTGAGGGGAAGAAGAGCGTNGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTTGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU173465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTaaaaaa                                                                      ]


>consensus_6622#0 AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGA GGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGT TGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGAC GAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGG GACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTGCTGGCTTCGCCGGCGATGTCGGTGGC GTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCA GCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAG GGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCT ACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTAT ATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGG TTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGAT ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCC TGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCT CGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTG AGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATC TCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAG AGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATG ATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGC CATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGAC AAGCTGAGAGTGTACCTTGA



consensusID : consensus_6622#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence
                              [AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761567             [AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6622#1 AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAA AAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAA TTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTT TTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGA AGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6622#0      AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGA 60
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      GGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGT 120
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      TGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGAC 180
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      GAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGG 240
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      GACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTGCTGGCTTCGCCGGCGATGTCGGTGGC 300
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      GTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCA 360
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      GCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAG 420
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      GGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCT 480
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      ACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTAT 540
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      ATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGG 600
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      TTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGAT 660
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCC 720
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      TGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCT 780
consensus_6622#1      ------------------------------------------------------------
                                                                                  

consensus_6622#0      CGCTGTTCAGGACT-GCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCT 839
consensus_6622#1      ------AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCT 54
                              *** *  ***** ** ************************************

consensus_6622#0      GAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAAT 899
consensus_6622#1      GAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAAT 114
                      ************ ******************* ******************** ******

consensus_6622#0      CTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCA 959
consensus_6622#1      CTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCA 174
                      ********** *********************************** *************

consensus_6622#0      GAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGAT 1019
consensus_6622#1      GAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGAT 234
                      ***** ******* ******* ************************* * **********

consensus_6622#0      GATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTG 1079
consensus_6622#1      GATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTG 294
                      ************** ************* **************************** **

consensus_6622#0      CCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGA 1139
consensus_6622#1      CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 331
                      ***         *  **    *  *           *                       

consensus_6622#0      CAAGCTGAGAGTGTACCTTGA 1160
consensus_6622#1      ---------------------
                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)