cluster # 6624

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Oryza sativa
cluster # 6624 cluster # 6624 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6624#0 length = 309 sequences # 3

consensus_6624#1 length = 291 sequences # 1

consensusID : consensus_6624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 309
fasta sequence

                              [TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAAAAA]

[+] EMBL AU058090             [TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAAAAA]
[+] EMBL AU197464             [                       GGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCANGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAA   ]
[+] EMBL OSC8061              [                       GGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTC                  ]




>consensus_6624#0
TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTG
TATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCG
AGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCA
CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTA
CTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGT
TAAAAAAAA

consensusID : consensus_6624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096173             [GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6624#1
GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCC
CCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTT
GGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTG
TTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCC
TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6624#0      TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTG 60
consensus_6624#1      -----------------------------------GACATCTGAGTGTGTTGAGTGTGTG 25
                                                         *************************

consensus_6624#0      TATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCG 120
consensus_6624#1      TATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCG 85
                      ***************************** *************** ****** *******

consensus_6624#0      AGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCA 180
consensus_6624#1      AGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCN 145
                      ********************* ***************** ************** * ** 

consensus_6624#0      CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTA 240
consensus_6624#1      CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTA 205
                      ************************************** *********************

consensus_6624#0      CTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGT 300
consensus_6624#1      CTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAA 265
                      ******************************* ******             *   ***  

consensus_6624#0      TAAAAAAAA----------------- 309
consensus_6624#1      AAAAAAAAAAAAAAAAAAAAAAAAAA 291
                       ********