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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1932 fasta sequence
[TCTCCATCGTTGACGGGCTTCTCCTCCTCCTCCTCCTCTCCCCCCTCGTCGCCGCCGTAGCCGGGGGGCGCCGCGGCGAAGCCGCCGATGCGGCCGGGTCCAGCCGCGGACGCCGCCTTCGTCGATCCACGCCGCGCCGTTGGAAGAACATGCTATGTGTTTGAGCAAAGATTTTCTGAATTAGTCGTCTCCTGCAGCAGGCTATTAGGTTATTAGTGCAAGACAACTTCCTAGTTCATTTTGTAAATTGTAACTCTTCGCACAAACAGTCAAATAGTCTCCACTCTCCAGTGGCTATTGACCAATCACCATGGAGACCCCGACAAATCTCACCAACACAATATCTGCAGTTCACCTGTTAAAAATCAATGGATATTCAGTAACCAGAGCACTTGGTTGTTCAGAGTATATCTCGTCGAGGAGATTGGCTGCAGGTGGATATGATTGGGAAGTTCTTTACTATCCACGCTATTATGAGCATGGTGTGTACTGGATAGCACTTCGACTTATGTTTATGAGCAAGGAATGTAAGCATGAGGTGAAGGCAGCTCTTAAATGTCAGTTAGTACATGAGGCACAAATTTATCTGCCATCCGGAAGTAAAAGTGTATCCTCTAAATATACAGGGCAACGAGATTGCGGGCCAGCGCTCCTGCTTGTAAAACAAGATGATTTGCCAGGATCCAATTATTTCATCGGGGATTCCTTTGTTGTGGAGTGCACCATCACTGTGTTAAGAGAGCCACAGGAAGCTGTGACTAATGTTTCTCCAAATGTTTCCAATCCATGCTGTGACTTGCAAATGCACCTTGGTGAACTCTTGCTGAGTGAAAAGGGGGCAGATGTCACGTTTGTTGTTGCAGGTGAATCTTTCTTGGCACACAAGATCATCCTCGCTGCTAGATCCCCTGTCTTCATGGCTGAGTTCTTTGGACCCATGAAGGAGAGTAGCTCACAGTGTGTGGAGATCAAGGACATAGAGGCATCAGTCTTCAAGGCCATGCTTCATTTCATTTACACTGGTACATCACCGGAGCTTGATCAGCAGCATGTCGTCAGTGACTCGGAGCAGGACATCACAACAATGACACAGCATTTGCTTGTTGCTGCAGACAGGTATGGATTGGACAGGCTCAAACTGATCTGCCAAGATAGGCTCCACGATGACATCAATGTGGAGACTGTTGCGACAACTTTGGCTTTCGCAGAGCAGCATAGCTGTACACAGCTGAAGGACAGGTGCATCGAGTTCATCATCTCTTCTCGTGCAAATCTTGATGCTGTTATGGCAACAGAGGGTTATAAGCTTGTGATAGCAAGCTGCCCGTCGGTTCTAAGTACCCTTCTGAGGGCAGCGGTTGGGAGATAGAAAGTGCTAAATAGCTGAAGATTTACCACTACAAGGAAAGCAGGAATACTGGTTGGAAATGCAATTTCCAAGGGGCACTCCTGCAAATTATTAAAGGGAAGTACTGCTCACCAAAAGGCAGTCTTTCGTAACCTATATTCAATAGGAAAAATGAGAAATTAATGGGAAAAATGTACAGCAATAATAAAATTCAAGTGACAGTATATACCATAGAAGTGCATTAAGGTCCCTGCAAAAACAAAAGAAAAAGAAGTGCCTCAAGGAACTCCGGGAAAACAGAAGAAGAGGATGGTCCATGAGCAACCTATGATTTGAGAAACAAAACCAGTTAGTATGTTCTTATTTCTAGGGAACCATAATAGCATTTCTTTACTTACATAAGAATTGAGTTTGTGCATTAGGCTTGTTCACTGTGTACTCCAGCCACTGTATCCGACTTCCTTGTTGTTGACAACATTTGTGACTACCTCATGAGTAATATCATGTACTTGCTGGTGTGTGTACAGTGACTGTCTCCCATTGTTTAGGATGTTGCAGGATGGTGCACATGTTGAATCAACCCG]
[+] EMBL AK067034 [TCTCCATCGTTGACGGGCTTCTCCTCCTCCTCCTCCTCTCCCCCCTCGTCGCCGCCGTAGCCGGGGGGCGCCGCGGCGAAGCCGCCGATGCGGCCGGGTCCAGCCGCGGACGCCGCCTTCGTCGATCCACGCCGCGCCGTTGGAAGAACATGCTATGTGTTTGAGCAAAGATTTTCTGAATTAGTCGTCTCCTGCAGCAGGCTATTAGGTTATTAGTGCAAGACAACTTCCTAGTTCATTTTGTAAATTGTAACTCTTCGCACAAACAGTCAAATAGTCTCCACTCTCCAGTGGCTATTGACCAATCACCATGGAGACCCCGACAAATCTCACCAACACAATATCTGCAGTTCACCTGTTAAAAATCAATGGATATTCAGTAACCAGAGCACTTGGTTGTTCAGAGTATATCTCGTCGAGGAGATTGGCTGCAGGTGGATATGATTGGGAAGTTCTTTACTATCCACGCTATTATGAGCATGGTGTGTACTGGATAGCACTTCGACTTATGTTTATGAGCAAGGAATGTAAGCATGAGGTGAAGGCAGCTCTTAAATGTCAGTTAGTACATGAGGCACAAATTTATCTGCCATCCGGAAGTAAAAGTGTATCCTCTAAATATACAGGGCAACGAGATTGCGGGCCAGCGCTCCTGCTTGTAAAACAAGATGATTTGCCAGGATCCAATTATTTCATCGGGGATTCCTTTGTTGTGGAGTGCACCATCACTGTGTTAAGAGAGCCACAGGAAGCTGTGACTAATGTTTCTCCAAATGTTTCCAATCCATGCTGTGACTTGCAAATGCACCTTGGTGAACTCTTGCTGAGTGAAAAGGGGGCAGATGTCACGTTTGTTGTTGCAGGTGAATCTTTCTTGGCACACAAGATCATCCTCGCTGCTAGATCCCCTGTCTTCATGGCTGAGTTCTTTGGACCCATGAAGGAGAGTAGCTCACAGTGTGTGGAGATCAAGGACATAGAGGCATCAGTCTTCAAGGCCATGCTTCATTTCATTTACACTGGTACATCACCGGAGCTTGATCAGCAGCATGTCGTCAGTGACTCGGAGCAGGACATCACAACAATGACACAGCATTTGCTTGTTGCTGCAGACAGGTATGGATTGGACAGGCTCAAACTGATCTGCCAAGATAGGCTCCACGATGACATCAATGTGGAGACTGTTGCGACAACTTTGGCTTTCGCAGAGCAGCATAGCTGTACACAGCTGAAGGACAGGTGCATCGAGTTCATCATCTCTTCTCGTGCAAATCTTGATGCTGTTATGGCAACAGAGGGTTATAAGCTTGTGATAGCAAGCTGCCCGTCGGTTCTAAGTACCCTTCTGAGGGCAGCGGTTGGGAGATAGAAAGTGCTAAATAGCTGAAGATTTACCACTACAAGGAAAGCAGGAATACTGGTTGGAAATGCAATTTCCAAGGGGCACTCCTGCAAATTATTAAAGGGAAGTACTGCTCACCAAAAGGCAGTCTTTCGTAACCTATATTCAATAGGAAAAATGAGAAATTAATGGGAAAAATGTACAGCAATAATAAAATTCAAGTGACAGTATATACCATAGAAGTGCATTAAGGTCCCTGCAAAAACAAAAGAAAAAGAAGTGCCTCAAGGAACTCCGGGAAAACAGAAGAAGAGGATGGTCCATGAGCAACCTATGATTTGAGAAACAAAACCAGTTAGTATGTTCTTATTTCTAGGGAACCATAATAGCATTTCTTTACTTACATAAGAATTGAGTTTGTGCATTAGGCTTGTTCACTGTGTACTCCAGCCACTGTATCCGACTTCCTTGTTGTTGACAACATTTGTGACTACCTCATGAGTAATATCATGTACTTGCTGGTGTGTGTACAGTGACTGTCTCCCATTGTTTAGGATGTTGCAGGATGGTGCACATGTTGAATCAACCCG]
[+] EMBL CF196938 [ CTTGGTTGTTCAGAGTATATCTCGTCGAGGAGATTGGCTGCAGGTGGATATGATTGGGAAGTTCTTTACTATCCACGCTATTATGAGCATGGTGTGTATTGGATAGCACTTCGACTTATGTTTATGAGCAAGGAATGTAAGCATGAGGTGAAGGCAGCTCTTAAATGTCAGTTAGTACATGAGGCACAAATTTATCTGCCATCCGGAAGTAAAAGTGTATCCTCTAAATATACAGGGCAACGAGATTGCGGGCCAGCGCTCCTGCTTGTAAAACAAGATGATTTGCCAGGATCCAATTATTTCATCGGGGATTNNTTTGTTGTGGAGTGCAC ]
consensusID : consensus_6625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[ACTCTCCCCCGTCGTCGCCGCCGTAGCCGGGGGGCGCCGCGGCGAAGCCGACGATGCGGGCGGGTCCAGCCGCGGACGCCGCCTTCGTCGATCCACGCCGAGCCGTTGGTAGGTACGCCCTGTTTATCTGCCTCTCCTCGCCGCGGGCGCGCGTACGGATGGGCTGGGGAATGGGGAACGAGCAGCTCACACCCAGGGGCTCTTTGGTAAGCAATGCGAGGGCGCCGAATGGACCA]
[+] EMBL CA756735 [ACTCTCCCCCGTCGTCGCCGCCGTAGCCGGGGGGCGCCGCGGCGAAGCCGACGATGCGGGCGGGTCCAGCCGCGGACGCCGCCTTCGTCGATCCACGCCGAGCCGTTGGTAGGTACGCCCTGTTTATCTGCCTCTCCTCGCCGCGGGCGCGCGTACGGATGGGCTGGGGAATGGGGAACGAGCAGCTCACACCCAGGGGCTCTTTGGTAAGCAATGCGAGGGCGCCGAATGGACCA]
consensusID : consensus_6625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[GAGAGTGTCATGAGCACTATGATCGAGACAACAGTAGTATGTCTATTTCTAGGAACCATAATAGCATTTCTTTACTTACATAAGAATTGAGTTTGTGCATTAGGCTGTTCACTGTGTACTCCAGCCACTGTATCCGACTTCCTTGTTGTTGACAACATTTGTGAGTACCTCATGAGTAATATCATGTACTTGCTGCGGCCGTCGAGTCATTCATATCAAGCTTT]
[-] EMBL AA749799 [GAGAGTGTCATGAGCACTATGATCGAGACAACAGTAGTATGTCTATTTCTAGGAACCATAATAGCATTTCTTTACTTACATAAGAATTGAGTTTGTGCATTAGGCTGTTCACTGTGTACTCCAGCCACTGTATCCGACTTCCTTGTTGTTGACAACATTTGTGAGTACCTCATGAGTAATATCATGTACTTGCTGCGGCCGTCGAGTCATTCATATCAAGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6625#0 TCTCCATCGTTGACGGGCTTCTCCTCCTCCTCCTCCTCTCCCCCCTCGTCGCCGCCGTAG 60
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 CCGGGGGGCGCCGCGGCGAAGCCGCCGATGCGGCCGGGTCCAGCCGCGGACGCCGCCTTC 120
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 GTCGATCCACGCCGCGCCGTTGGAAGAACATGCTATGTGTTTGAGCAAAGATTTTCTGAA 180
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TTAGTCGTCTCCTGCAGCAGGCTATTAGGTTATTAGTGCAAGACAACTTCCTAGTTCATT 240
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TTGTAAATTGTAACTCTTCGCACAAACAGTCAAATAGTCTCCACTCTCCAGTGGCTATTG 300
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 ACCAATCACCATGGAGACCCCGACAAATCTCACCAACACAATATCTGCAGTTCACCTGTT 360
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 AAAAATCAATGGATATTCAGTAACCAGAGCACTTGGTTGTTCAGAGTATATCTCGTCGAG 420
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 GAGATTGGCTGCAGGTGGATATGATTGGGAAGTTCTTTACTATCCACGCTATTATGAGCA 480
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TGGTGTGTACTGGATAGCACTTCGACTTATGTTTATGAGCAAGGAATGTAAGCATGAGGT 540
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 GAAGGCAGCTCTTAAATGTCAGTTAGTACATGAGGCACAAATTTATCTGCCATCCGGAAG 600
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TAAAAGTGTATCCTCTAAATATACAGGGCAACGAGATTGCGGGCCAGCGCTCCTGCTTGT 660
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 AAAACAAGATGATTTGCCAGGATCCAATTATTTCATCGGGGATTCCTTTGTTGTGGAGTG 720
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 CACCATCACTGTGTTAAGAGAGCCACAGGAAGCTGTGACTAATGTTTCTCCAAATGTTTC 780
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 CAATCCATGCTGTGACTTGCAAATGCACCTTGGTGAACTCTTGCTGAGTGAAAAGGGGGC 840
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 AGATGTCACGTTTGTTGTTGCAGGTGAATCTTTCTTGGCACACAAGATCATCCTCGCTGC 900
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TAGATCCCCTGTCTTCATGGCTGAGTTCTTTGGACCCATGAAGGAGAGTAGCTCACAGTG 960
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TGTGGAGATCAAGGACATAGAGGCATCAGTCTTCAAGGCCATGCTTCATTTCATTTACAC 1020
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TGGTACATCACCGGAGCTTGATCAGCAGCATGTCGTCAGTGACTCGGAGCAGGACATCAC 1080
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 AACAATGACACAGCATTTGCTTGTTGCTGCAGACAGGTATGGATTGGACAGGCTCAAACT 1140
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 GATCTGCCAAGATAGGCTCCACGATGACATCAATGTGGAGACTGTTGCGACAACTTTGGC 1200
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TTTCGCAGAGCAGCATAGCTGTACACAGCTGAAGGACAGGTGCATCGAGTTCATCATCTC 1260
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TTCTCGTGCAAATCTTGATGCTGTTATGGCAACAGAGGGTTATAAGCTTGTGATAGCAAG 1320
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 CTGCCCGTCGGTTCTAAGTACCCTTCTGAGGGCAGCGGTTGGGAGATAGAAAGTGCTAAA 1380
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 TAGCTGAAGATTTACCACTACAAGGAAAGCAGGAATACTGGTTGGAAATGCAATTTCCAA 1440
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 GGGGCACTCCTGCAAATTATTAAAGGGAAGTACTGCTCACCAAAAGGCAGTCTTTCGTAA 1500
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 CCTATATTCAATAGGAAAAATGAGAAATTAATGGGAAAAATGTACAGCAATAATAAAATT 1560
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 CAAGTGACAGTATATACCATAGAAGTGCATTAAGGTCCCTGCAAAAACAAAAGAAAAAGA 1620
consensus_6625#2 ------------------------------------------------------------
consensus_6625#1 ------------------------------------------------------------
consensus_6625#0 AGTGCCTCAAGGAACTCCGGGAAAACAGAAGAAGAGGATGGTCCATGAGCAACCTATGAT 1680
consensus_6625#2 ---------------------------------GAGAGTG--TCATGAGCA--CTATGAT 23
consensus_6625#1 --------------------------ACTCTCCCCCGTCGTCGCCGCCGTAGCCGGGGGG 34
* * * * * *
consensus_6625#0 TTGAGAAACAAAACCAGTTAGTATGTTCTTATTTCTAGGGAACCATAATAGCATTTCTTT 1740
consensus_6625#2 C---GAGACAA---CAGT-AGTATGT--CTATTTCTAGG-AACCATAATAGCATTTCTTT 73
consensus_6625#1 CGCCGCGGCGAAGCCGAC---GATGCGGGCGGGTCCAGC-CGCGGACGCCGCCTTCGTCG 90
* * * * *** ** ** * ** ** *
consensus_6625#0 ACTTACATAAGAATTGAGTTTGTGCATTAGGCTTGTTCA-CTGTGTACTCCAGCCAC--- 1796
consensus_6625#2 ACTTACATAAGAATTGAGTTTGTGCATTAGGCT-GTTCA-CTGTGTACTCCAGCCAC--- 128
consensus_6625#1 ATCCACGCCGAGCC---GTTGGTAGGTACGCCCTGTTTATCTGCCTCTCCTCGCCGCGGG 147
* ** *** ** * * * *** * *** * * *** *
consensus_6625#0 --TGTATCCGACTTCCTTGTTGTTGACAACATTTGTGACTACCTCATGAGTAATATCATG 1854
consensus_6625#2 --TGTATCCGACTTCCTTGTTGTTGACAACATTTGTGAGTACCTCATGAGTAATATCATG 186
consensus_6625#1 CGCGCGTACGGATGGGCTGGGGAATGGGGAACGAGCAGCTCACACCCAGGGGCTCTTTGG 207
* * ** * ** * * * * * * * * * *
consensus_6625#0 TACTTGCTGGT-GTGTGTACAGTGACTGTCTCCCATTGTTTAGGATGTTGCAGGATGGTG 1913
consensus_6625#2 TACTTGCTGCG-GC-CGTCGAGTCATTCATATCAAGCTTT-------------------- 224
consensus_6625#1 TAAGCAATGCGAGGGCGCCGAATGGACCA------------------------------- 236
** ** * * * *
consensus_6625#0 CACATGTTGAATCAACCCG 1932
consensus_6625#2 -------------------
consensus_6625#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||