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Oryza sativa
cluster # 6634 cluster # 6634       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6634#0 length = 1523 sequences # 4  

consensusID : consensus_6634#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1523
fasta sequence
                              [AATAGGGGGGAAGAGAGATTTCCCTCGCGCGCTTNTCGTTCGCCTTCTTCCCCTTTGCGGATTTNAATCCGCTCGGGGGCGCTATTACCTATTGGCGCCGCGGCGGCGGCGGC-GGCGATTTGAGTCGGGATCCCGCTCGATGGCGGAGGGCTTCGGGCGGTGGGAGGCGGATCCGCTCTTCCCCGCCGCCGAGTGCGTGCAGGACTCCGCCGACAGGATGGAGGGTGTGTACCGCTTGCTCTTGCATGAAAGAAAACTGATACAAGATGATACCTCACATACAAAACGTCGTGTATCAATGCAGTATGAGAGAGATGTG-TGCACTGCTCTTGGAACAACAAAGTGGCAGTTGGAGCAA-TTTGAGCGAGAAG-TGAATGCAGCGGCA-TTGTCTAA-TAAGTCAAATTCAAGGGAAAATGCCATCTTGCAATTTAGGCAATTTATTAGAGCTATAGCGGAGCAAATTTCTCAGGTGGAAGATAGTTTGGAGAGTCTTAGGAATGATTCCATTAGAACACCAAAACATTCATACTTGACTGAACATGATGGAGATGAATTGGCATCTTTTCTTTCTGGTAGTAATAGAAAGGATAATCATGTGATTTATTCCACTGGAACAGATGAAATTGTTGAGCTCAAGCTTGATAGTGTTCCTGCAGTAAATGGTTATCATTCCACCCAAGAACGTACATCATGTGAATTCAGATATTCAGGAGAAGATGTGGAAGGAGCAGCCAAGCCTCAATGTTCATGCGGGGAAAATGCATGTGAAGGAGATCATAATGGTAGCAGTATGCGTGGTTTGGATTCTGATGATTCAATAGGTAGGAAGCATCATTTCAGGAGCAAACTGAGCAGGAAATACCACAGTTTTATGCGGAATTTATGGTTTACAAATAGAGGACGTGAGAGTTTTACAAAGAGGAGGAAAGATGGAGAAGTTATGGATAGCTTGAGAAATGGAAGTACATTACCTTCATTCAATCTACCTCCAGCTGGAAGGGCTATGTATTTCTGGCCTGAGCTTATCAAGAGGAGATTAAGTAAATTTAAATGCTCTACACATCACAAGCATCTTCAAGTCCGTTTAGCAACAGTACTACTAATTGCCCTTGCTGTACTTGGCTTGCTGGTTTTGCATGTGAGATGACTGGGAGCAGTATCCGGTTTTGGTCCCTGTTGTGTACGTGCCAATCGCCATGTTGCACTGTACCAATCAATCATTTTCATAGTTCCTGATGGGGGAGGATCCGTGTGCTATTGAGCACCATTTGCTATTTTATATTGCCATTCGAGGGAGACATAGGTTTGGCGTCATTTGATTGCTCCTAAGTAGCCTGGACCAGCACTGACATGAGCTGTGATTTTCCACAAATCCACATTTTTTGTTCAGAACTGCCACGTGAATACACGATGTATTGTATTGGCTTGTTTGTGATACTTGCACAATCAAGTAATCAACCATTGTCTGATCAGTAAGATGACAAAGTCTTCTCCAGATTTTTACGGTAGCAATCCTGTTAATA]

[+] EMBL OSS2955A             [AATAGGGGGGAAGAGAGATTTCCCTCGCGCGCTTNTCGTTCGCCTTCTTCCCCTTTGCGGATTTNAATCCGCTCGGGGGCGCTATTACCTATTGGCGCCGCGGCGGC GTGGCNGGCGATTTGAGTCGGGATCCCGCTCGATGGCGGAGGGCTTCGGGNGNNNGGAGGCGGATCCGNTCTTCCCCGCCGNCGAGTGCGTNCAGGACTCCGCCGACAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK071068             [             AGAGATTTCCCTCGCGCGCTTGTCGTTCGCCTTCTTCCCCTTTGCGGATTTGAATCCGCTCGGGGGCGCTATTACCTATTGGCGCCGCGGCGGCGGCGGC GGCGATTTGAGTCGGGATCCCGCTCGATGGCGGAGGGCTTCGGGCGGTGGGAGGCGGATCCGCTCTTCCCCGCCGCCGAGTGCGTGCAGGACTCCGCCGACAGGATGGAGGGTGTGTACCGCTTGCTCTTGCATGAAAGAAAACTGATACAAGATGATACCTCACATACAAAACGTCGTGTATCAATGCAGTATGAGAGAGATGTG TGCACTGCTCTTGGAACAACAAAGTGGCAGTTGGAGCAA TTTGAGCGAGAAG TGAATGCAGCGGCA TTGTCTAA TAAGTCAAATTCAAGGGAAAATGCCATCTTGCAATTTAGGCAATTTATTAGAGCTATAGCGGAGCAAATTTCTCAGGTGGAAGATAGTTTGGAGAGTCTTAGGAATGATTCCATTAGAACACCAAAACATTCATACTTGACTGAACATGATGGAGATGAATTGGCATCTTTTCTTTCTGGTAGTAATAGAAAGGATAATCATGTGATTTATTCCACTGGAACAGATGAAATTGTTGAGCTCAAGCTTGATAGTGTTCCTGCAGTAAATGGTTATCATTCCACCCAAGAACGTACATCATGTGAATTCAGATATTCAGGAGAAGATGTGGAAGGAGCAGCCAAGCCTCAATGTTCATGCGGGGAAAATGCATGTGAAGGAGATCATAATGGTAGCAGTATGCGTGGTTTGGATTCTGATGATTCAATAGGTAGGAAGCATCATTTCAGGAGCAAACTGAGCAGGAAATACCACAGTTTTATGCGGAATTTATGGTTTACAAATAGAGGACGTGAGAGTTTTACAAAGAGGAGGAAAGATGGAGAAGTTATGGATAGCTTGAGAAATGGAAGTACATTACCTTCATTCAATCTACCTCCAGCTGGAAGGGCTATGTATTTCTGGCCTGAGCTTATCAAGAGGAGATTAAGTAAATTTAAATGCTCTACACATCACAAGCATCTTCAAGTCCGTTTAGCAACAGTACTACTAATTGCCCTTGCTGTACTTGGCTTGCTGGTTTTGCATGTGAGATGACTGGGAGCAGTATCCGGTTTTGGTCCCTGTTGTGTACGTGCCAATCGCCATGTTGCACTGTACCAATCAATCATTTTCATAGTTCCTGATGGGGGAGGATCCGTGTGCTATTGAGCACCATTTGCTATTTTATATTGCCATTCGAGGGAGACATAGGTTTGGCGTCATTTGATTGCTCCTAAGTAGCCTGGACCAGCACTGACATGAGCTGTGATTTTCCACAAATCCACATTTTTTGTTCAGAACTGCCACGTGAATACACGATGTATTGTATTGGCTTGTTTGTGATACTTGCACAATCAAGTAATCAACCATTGTCTGATCAGTAAGATGACAAAGTCTTCTCCAGATTTTTACGGTAGCAATCCTGTTAATA]
[+] EMBL AU077594             [                                                                                                   GCGGC GCGGCG   GGCGATTTGAGTCGGGATCCCGCTCGATGGCGGAGGGCTTCGGGCGGTGGGAGGCGGATCCGCTCTTCCCCGCCGCCGAGTGCGTGCAGGACTCCGCCGACAGGATGGAGGGTGTGTACCGCTTGCTCTTGCATGAAAGAAAACTGATACAAGATGATACCTCACATACAAAACGTCGTGTATCAATGCAGTATGAGAGAGATGTGTTGCACTGCTCTTGGAACAACAAAGTGGCAGTTGGAGCAATTTTGAGCGANAAGTTGAATGCAGCGGCATTTGTCTAANAAAGTCAAATTCNAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU174275             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CACATCACAAGCATCTTCAAGTCCGTTTAGCAACAGTACTACTAATTGCCCTTGCTGTACTTGGCTTGCTGGTTTTGCATGTGAGATGACTGGGAGCAGTATCCGGTTTTGGTCCCTGTTGTGTACGTGCCAATCGCCATGTTGCACTGTACCAATCAATCATTTTCATAGTTCCTGATGGAGGAGGATCCGTGTGCTATTGAGCACCATTTGCTATTTTATATTGCCATTCGAGGGAGACATAGGTTTGGCGTCATTTGATTGCTCCTAAGTAGCCTGGACCAGCACTGACATGAGCTGTGATTTTCCACAAATCCACATTTTTTGTTCAGAACTGCCACGTGAATACACGATGTATTGTATTGGCTTGTTTGTGATACTTGCACAATCAAGTAATCAACCATTGTCTGATCAGTAAGATGACAAAGTTTTCTCCAGAaaaaaa                    ]


>consensus_6634#0 AATAGGGGGGAAGAGAGATTTCCCTCGCGCGCTTNTCGTTCGCCTTCTTCCCCTTTGCGG ATTTNAATCCGCTCGGGGGCGCTATTACCTATTGGCGCCGCGGCGGCGGCGGCGGCGATT TGAGTCGGGATCCCGCTCGATGGCGGAGGGCTTCGGGCGGTGGGAGGCGGATCCGCTCTT CCCCGCCGCCGAGTGCGTGCAGGACTCCGCCGACAGGATGGAGGGTGTGTACCGCTTGCT CTTGCATGAAAGAAAACTGATACAAGATGATACCTCACATACAAAACGTCGTGTATCAAT GCAGTATGAGAGAGATGTGTGCACTGCTCTTGGAACAACAAAGTGGCAGTTGGAGCAATT TGAGCGAGAAGTGAATGCAGCGGCATTGTCTAATAAGTCAAATTCAAGGGAAAATGCCAT CTTGCAATTTAGGCAATTTATTAGAGCTATAGCGGAGCAAATTTCTCAGGTGGAAGATAG TTTGGAGAGTCTTAGGAATGATTCCATTAGAACACCAAAACATTCATACTTGACTGAACA TGATGGAGATGAATTGGCATCTTTTCTTTCTGGTAGTAATAGAAAGGATAATCATGTGAT TTATTCCACTGGAACAGATGAAATTGTTGAGCTCAAGCTTGATAGTGTTCCTGCAGTAAA TGGTTATCATTCCACCCAAGAACGTACATCATGTGAATTCAGATATTCAGGAGAAGATGT GGAAGGAGCAGCCAAGCCTCAATGTTCATGCGGGGAAAATGCATGTGAAGGAGATCATAA TGGTAGCAGTATGCGTGGTTTGGATTCTGATGATTCAATAGGTAGGAAGCATCATTTCAG GAGCAAACTGAGCAGGAAATACCACAGTTTTATGCGGAATTTATGGTTTACAAATAGAGG ACGTGAGAGTTTTACAAAGAGGAGGAAAGATGGAGAAGTTATGGATAGCTTGAGAAATGG AAGTACATTACCTTCATTCAATCTACCTCCAGCTGGAAGGGCTATGTATTTCTGGCCTGA GCTTATCAAGAGGAGATTAAGTAAATTTAAATGCTCTACACATCACAAGCATCTTCAAGT CCGTTTAGCAACAGTACTACTAATTGCCCTTGCTGTACTTGGCTTGCTGGTTTTGCATGT GAGATGACTGGGAGCAGTATCCGGTTTTGGTCCCTGTTGTGTACGTGCCAATCGCCATGT TGCACTGTACCAATCAATCATTTTCATAGTTCCTGATGGGGGAGGATCCGTGTGCTATTG AGCACCATTTGCTATTTTATATTGCCATTCGAGGGAGACATAGGTTTGGCGTCATTTGAT TGCTCCTAAGTAGCCTGGACCAGCACTGACATGAGCTGTGATTTTCCACAAATCCACATT TTTTGTTCAGAACTGCCACGTGAATACACGATGTATTGTATTGGCTTGTTTGTGATACTT GCACAATCAAGTAATCAACCATTGTCTGATCAGTAAGATGACAAAGTCTTCTCCAGATTT TTACGGTAGCAATCCTGTTAATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)