These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence [GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAGCCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTAGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACC-ACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCT-GTCGTATGTCA-TGGGGATAAACTAACA-TGGTGG-TTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAAT-AAACA-CTTCGTTTGTGTCTGGAATGAAGTGTTAAA-CTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTG-CATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA] [+] EMBL BI800847 [GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAGCCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTAGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACC ACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCT GTCGTATGTCA TGGGGATAAACTAACA TGGTGG TTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAAT AAACA CTTCGTTTGTGTCTGGAATGAAGTGTTAAA CTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTG CATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA] [+] EMBL BI797549 [ CTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTGGTCGTATGTCACTGGGGATAAACTAACACTGGTGGCTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACCTTCGTTTGTGTCTGGAATGAAGTGTTAAACCTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTC AACGTGCGTGCCATTGAAATTGGGAAAGCACTCTTAAAAAAAAAA ] consensusID : consensus_6635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCATCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA] [+] EMBL AA751600 [GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCATCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA] consensusID : consensus_6635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCAATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGA] [+] EMBL AA750237 [TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCAATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6635#0 -------GTTTC-CTATGC-CTGTGGGGAGCTGGCCTTTTACACCC---GTGGTTACCTC 48 consensus_6635#1 -------GAGCC-ACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTG 52 consensus_6635#2 TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACC-GTGGTTACCTC 59 * * * *** ** ** consensus_6635#0 AATGTTG-ATCAGCCTTCCAAGAG-TTGCTGAAACACGTTATCCGTTGTTACCTCAGGAT 106 consensus_6635#1 ATTGATC-ATCANTGN-CTAGNAG-TGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGAT 109 consensus_6635#2 AATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGAT 119 * ** * **** * * ** * ** * * * ********* ********** consensus_6635#0 GTCAGAGAATCCTAGGG-TTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGA 165 consensus_6635#1 GTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGA 169 consensus_6635#2 GTCAGAGA---------------------------------------------------- 127 ******** consensus_6635#0 TGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCA-CAACT 224 consensus_6635#1 TGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACT 229 consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 GCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTG-TCGTAT 283 consensus_6635#1 GCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTAT 289 consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 GTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTG 343 consensus_6635#1 GTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTG 349 consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 AATTGCAGCTAACAATTAAATAAA-CACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTG 402 consensus_6635#1 AATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTG 409 consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 AAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTGC 462 consensus_6635#1 AAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA---------------------- 447 consensus_6635#2 ------------------------------------------------------------ consensus_6635#0 ATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA 496 consensus_6635#1 ---------------------------------- consensus_6635#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||