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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 496 fasta sequence
[GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAGCCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTAGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACC-ACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCT-GTCGTATGTCA-TGGGGATAAACTAACA-TGGTGG-TTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAAT-AAACA-CTTCGTTTGTGTCTGGAATGAAGTGTTAAA-CTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTG-CATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA]
[+] EMBL BI800847 [GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAGCCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTAGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACC ACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCT GTCGTATGTCA TGGGGATAAACTAACA TGGTGG TTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAAT AAACA CTTCGTTTGTGTCTGGAATGAAGTGTTAAA CTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTG CATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA]
[+] EMBL BI797549 [ CTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTGGTCGTATGTCACTGGGGATAAACTAACACTGGTGGCTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACCTTCGTTTGTGTCTGGAATGAAGTGTTAAACCTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTC AACGTGCGTGCCATTGAAATTGGGAAAGCACTCTTAAAAAAAAAA ]
consensusID : consensus_6635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCATCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA]
[+] EMBL AA751600 [GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCATCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA]
consensusID : consensus_6635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence
[TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCAATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGA]
[+] EMBL AA750237 [TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCAATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6635#0 -------GTTTC-CTATGC-CTGTGGGGAGCTGGCCTTTTACACCC---GTGGTTACCTC 48
consensus_6635#1 -------GAGCC-ACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTG 52
consensus_6635#2 TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACC-GTGGTTACCTC 59
* * * *** ** **
consensus_6635#0 AATGTTG-ATCAGCCTTCCAAGAG-TTGCTGAAACACGTTATCCGTTGTTACCTCAGGAT 106
consensus_6635#1 ATTGATC-ATCANTGN-CTAGNAG-TGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGAT 109
consensus_6635#2 AATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGAT 119
* ** * **** * * ** * ** * * * ********* **********
consensus_6635#0 GTCAGAGAATCCTAGGG-TTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGA 165
consensus_6635#1 GTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGA 169
consensus_6635#2 GTCAGAGA---------------------------------------------------- 127
********
consensus_6635#0 TGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCA-CAACT 224
consensus_6635#1 TGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACT 229
consensus_6635#2 ------------------------------------------------------------
consensus_6635#0 GCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTG-TCGTAT 283
consensus_6635#1 GCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTAT 289
consensus_6635#2 ------------------------------------------------------------
consensus_6635#0 GTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTG 343
consensus_6635#1 GTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTG 349
consensus_6635#2 ------------------------------------------------------------
consensus_6635#0 AATTGCAGCTAACAATTAAATAAA-CACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTG 402
consensus_6635#1 AATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTG 409
consensus_6635#2 ------------------------------------------------------------
consensus_6635#0 AAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTGC 462
consensus_6635#1 AAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA---------------------- 447
consensus_6635#2 ------------------------------------------------------------
consensus_6635#0 ATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA 496
consensus_6635#1 ----------------------------------
consensus_6635#2 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||