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Oryza sativa
cluster # 6635 cluster # 6635       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6635#0 length = 496 sequences # 2  
consensus_6635#1 length = 447 sequences # 1  
consensus_6635#2 length = 127 sequences # 1  

consensusID : consensus_6635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 496
fasta sequence
                              [GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAGCCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTAGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACC-ACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCT-GTCGTATGTCA-TGGGGATAAACTAACA-TGGTGG-TTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAAT-AAACA-CTTCGTTTGTGTCTGGAATGAAGTGTTAAA-CTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTG-CATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA]

[+] EMBL BI800847             [GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAGCCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTAGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACC ACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCT GTCGTATGTCA TGGGGATAAACTAACA TGGTGG TTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAAT AAACA CTTCGTTTGTGTCTGGAATGAAGTGTTAAA CTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTG CATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA]
[+] EMBL BI797549             [                                                                                                                                                             CTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTGGTCGTATGTCACTGGGGATAAACTAACACTGGTGGCTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACCTTCGTTTGTGTCTGGAATGAAGTGTTAAACCTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTC AACGTGCGTGCCATTGAAATTGGGAAAGCACTCTTAAAAAAAAAA ]


>consensus_6635#0 GTTTCCTATGCCTGTGGGGAGCTGGCCTTTTACACCCGTGGTTACCTCAATGTTGATCAG CCTTCCAAGAGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGAATCCTA GGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAG CTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCACAACTGCTGGTTAAGATGACA AGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTGTCGTATGTCATGGGGATAAACTA ACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATT AAATAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTT GTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTGCATTGAAATTGGGAAAGCA CTCTTATAAAAAAAAA



consensusID : consensus_6635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence
                              [GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCATCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA]

[+] EMBL AA751600             [GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCATCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA]


>consensus_6635#1 GAGCCACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTGATTGATCA TCANTGNCTAGNAGTGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGATGTCAGAGAATC CTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGATGGCACATTCA ACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACTGCTGGTTAAGA TGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTATGTCATGGGGAT AAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTGAATTGCAGCTA ACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTGAAGTGAAAGCT TTGAGTTGTATTAATAAGTACCGCAAA



consensusID : consensus_6635#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence
                              [TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCAATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGA]

[+] EMBL AA750237             [TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCAATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATGTCAGAGA]


>consensus_6635#2 TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACCGTGGTTACCTCA ATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGATG TCAGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6635#0      -------GTTTC-CTATGC-CTGTGGGGAGCTGGCCTTTTACACCC---GTGGTTACCTC 48
consensus_6635#1      -------GAGCC-ACAAACACAANAGGAAAAAAAACATATACACTTCTAGTGATTGTCTG 52
consensus_6635#2      TGTGCCAATGCTGATCGGTTCTATGCTGTGGGAGCTGCTTTAGCAACC-GTGGTTACCTC 59
                                          *                  *   *     *** **  ** 

consensus_6635#0      AATGTTG-ATCAGCCTTCCAAGAG-TTGCTGAAACACGTTATCCGTTGTTACCTCAGGAT 106
consensus_6635#1      ATTGATC-ATCANTGN-CTAGNAG-TGTCTNNTNCTCCTCATCCGTTGTNACCTCAGGAT 109
consensus_6635#2      AATGGTTGATCAGCCTTCCAAGAGGTTGCTGAAACACGTTATCCGTTGTTACCTCAGGAT 119
                      * ** *  ****     * *  ** *  **    * * * ********* **********

consensus_6635#0      GTCAGAGAATCCTAGGG-TTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGA 165
consensus_6635#1      GTCAGAGAATCCTAGGGGTTTCGCTGCACTGCAGACTTGCCTTCCTCCTCAGCTGAAAGA 169
consensus_6635#2      GTCAGAGA---------------------------------------------------- 127
                      ********                                                    

consensus_6635#0      TGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCA-CAACT 224
consensus_6635#1      TGGCACATTCAACAGCTGTCTTAGGGATGATCCTTCAGGGCGACATTTGCACCAACAACT 229
consensus_6635#2      ------------------------------------------------------------
                                                                                  

consensus_6635#0      GCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTAACAGCGCTG-TCGTAT 283
consensus_6635#1      GCTGGTTAAGATGACAAGTGGAAAAAAGGGAGGAGGAGCTGGTNNNAGCGCTGGTCGTAT 289
consensus_6635#2      ------------------------------------------------------------
                                                                                  

consensus_6635#0      GTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTG 343
consensus_6635#1      GTCATGGGGATAAACTAACATGGTGGTTGTAAATTACTGCAGTGATGCATTGTTACTGTG 349
consensus_6635#2      ------------------------------------------------------------
                                                                                  

consensus_6635#0      AATTGCAGCTAACAATTAAATAAA-CACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTG 402
consensus_6635#1      AATTGCAGCTAACAATTAAATAAAACACTTCGTTTGTGTCTGGAATGAAGTGTTAAACTG 409
consensus_6635#2      ------------------------------------------------------------
                                                                                  

consensus_6635#0      AAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAACTGACTCATTCAAACGTGCGTGC 462
consensus_6635#1      AAGTGAAAGCTTTGAGTTGTATTAATAAGTACCGCAAA---------------------- 447
consensus_6635#2      ------------------------------------------------------------
                                                                                  

consensus_6635#0      ATTGAAATTGGGAAAGCACTCTTATAAAAAAAAA 496
consensus_6635#1      ----------------------------------
consensus_6635#2      ----------------------------------
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)