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Oryza sativa
cluster # 6649 cluster # 6649       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6649#0 length = 811 sequences # 2  
consensus_6649#1 length = 590 sequences # 1  
consensus_6649#2 length = 418 sequences # 1  

consensusID : consensus_6649#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 811
fasta sequence
                              [TTTTTTTTTTTTTAAAGAAATG-GCCTTG-CTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAGTCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGGGACCTGAAGCAGTAGTACTCTTCT]

[+] EMBL CA763303             [TTTTTTTTTTTTTAAAGAAATG GCCTTG CTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAGTCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGG                                                                                                                      ]
[+] EMBL CB632762             [           gTAAAGAAATGAGCCTTGACTGGCCTTTAAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAATGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAACAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGGGACCTGAAGCAGTAGTACTCTTCT]


>consensus_6649#0 TTTTTTTTTTTTTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCAT TATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAAACTGCT ATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAA AAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAA ATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTNCAG TCGAAGAGTAGCACGGCATTGCTTGTATCAGGCTCAAGCGCAAATATTAATTCAAAAATA ATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTG TCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATG GTCTTGGTACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACG CTCCGTCAATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCA ACCGAACAACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAG GTAAGGATCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCC ACAATACATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCA TCATTGGGACCTGAAGCAGTAGTACTCTTCT



consensusID : consensus_6649#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence
                              [NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACCTCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT]

[-] EMBL CA764017             [NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACCTCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCCACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTAAGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTCCGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCATACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACACCTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATTCAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT]


>consensus_6649#1 NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACC TCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA AGACTGCTATATCCCAAAATTTCACATATAACACAAAAATTTACAACACCGAATTGGGTC CGCCTAAAAAGTTATATATGCAATGCACTGGTATGTGCCTTCACGTTCTGAAATATCCAT ACAAACAAATCGGCTCTCTTGACTGCCAACTAGTCAAGGTGAGCATGAACCTGACAACAC CTCTGCAGTCGAAGAGTAGCACGGCATTGCTTGTATCATGCTCAAGCGCAAATATTAATT CAAAAATAATTTTCTGAGACATCATCATGCAAGTGTATCTAGTGTCGATCCTTTGATGAG AGCATTTGTCATCTAACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGG GGCATATGGTCTTGGTACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT



consensusID : consensus_6649#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence
                              [TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC]

[-] EMBL BM421346             [TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC]


>consensus_6649#2 TTTTTTTTTAAATGGGACCGCCCACTGGCATTATACATATATCAAATATATCTACAAATA AAGCTCTGGTGGCATTATGACTAAGACTGCTATATCCCCAAAATTTCACATATAACACCA ACAAATTTACAACACCGCAATGGGGTCCGCCTCACACAAAGTTCATCATCATGCAATGCA CGTGGTATGTGCCTTCACGTTCTGCAAATATCCATCACCACAACAACATCGGCTCTCTTG CACTGCCAACTAGTCAAGGGTGAGCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGA CAGCAGTCAGCCACGGCCATTGCCTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTC CAACACAATCAATTTTCTGCAGCACATCCATCCATGCAAGGTGTATCTAGTGTCGATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6649#1      NCATTTTTTGGNATATATAGAANCCGCGCCAACCGATTTTCTTGCAACCATTTGAAGACC 60
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      ------------------------------------------------------------
                                                                                  

consensus_6649#1      TCTCAAATCCTTGCTTGGGGTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC 120
consensus_6649#2      -------------------------------------TTTTTTTTTAAATGGGACCGCCC 23
consensus_6649#0      --------TTTTTTTTTTTTTAAAGAAATGGCCTTGCTGGCCATGTAAATTGGACCGCCC 52
                                                           *     * ***** *********

consensus_6649#1      ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA 180
consensus_6649#2      ACTGGCATTATACATATATCAAATATATCTACAAATAAAGCTCTGGTGGCATTATGACTA 83
consensus_6649#0      ACTTGCATTATACATATATAAAATATATCTACAAATAAAGCTCTTGTTGCATTATGACTA 112
                      *** *************** ************************ ** ************

consensus_6649#1      AGACTGCTATATCCC-AAAATTTCACATATAACACAAA--AATTTACAACACCG-AATTG 236
consensus_6649#2      AGACTGCTATATCCCCAAAATTTCACATATAACACCAACAAATTTACAACACCGCAATGG 143
consensus_6649#0      AAACTGCTATATCCC-AAAATTTCACATATAACACAAA--AATTTACAACACCG-AATTG 168
                      * ************* ******************* **  ************** *** *

consensus_6649#1      GGTCCGCCT---AAAAAGTT--ATAT-ATGCAATGCAC-TGGTATGTGCCTTCACGTTCT 289
consensus_6649#2      GGTCCGCCTCACACAAAGTTCATCATCATGCAATGCACGTGGTATGTGCCTTCACGTTCT 203
consensus_6649#0      GGTCCGCCT---AAAAAGTT--ATAT-ATGCAATGCAC-TGGTATGTGCCTTCACGTTCT 221
                      *********   * ******    ** *********** *********************

consensus_6649#1      G-AAATATCCAT----ACAAACAAATCGGCTCTCTTG-ACTGCCAACTAGTCAAGG-TGA 342
consensus_6649#2      GCAAATATCCATCACCACAACAACATCGGCTCTCTTGCACTGCCAACTAGTCAAGGGTGA 263
consensus_6649#0      G-AAATATCCAT----ACAAACAAATCGGCTCTCTTG-ACTGCCAACTAGTCAAGG-TGA 274
                      * **********    ****  * ************* ****************** ***

consensus_6649#1      GC---ATGAACCTG-ACAAC--ACCTCTGCAGTCGAAGAGTAG-----CACGGC-ATTGC 390
consensus_6649#2      GCCATGCAACCCTGCACAACCACCCTCTGCCAGTCGACAGCAGTCAGCCACGGCCATTGC 323
consensus_6649#0      GC---ATGAACCTG-ACAAC--ACCTCTNCAGTCGAAGAGTAG-----CACGGC-ATTGC 322
                      **      * **** *****   ***** *      * ** **     ****** *****

consensus_6649#1      TT---GTATC-ATGCTCAAGCGCAAAT--ATTAATTCAAAAATA----ATTTTCTGAGAC 440
consensus_6649#2      CTAGTGTATCCATGCTCAAGCGCAAATCATTCAATTCCAACACAATCAATTTTCTGCAGC 383
consensus_6649#0      TT---GTATC-AGGCTCAAGCGCAAAT--ATTAATTCAAAAATA----ATTTTCTGAGAC 372
                       *   ***** * **************   * ***** ** * *    ********   *

consensus_6649#1      A---TCATC-ATGCAAG-TGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTA 495
consensus_6649#2      ACATCCATCCATGCAAGGTGTATCTAGTGTCGATC------------------------- 418
consensus_6649#0      A---TCATC-ATGCAAG-TGTATCTAGTGTCGATCCTTTGATGAGAGCATTTGTCATCTA 427
                      *    **** ******* *****************                         

consensus_6649#1      ACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGG 555
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      ACCATATGATAAGTCCTGAACGGTACGACCACTAGTGTTGCGAGGGGCATATGGTCTTGG 487
                                                                                  

consensus_6649#1      TACCTTCCATCTCAGCAATTCCCCCCTTGTCTCGT------------------------- 590
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      TACCTTCCATCTCAGCAATTCCTTTGTTGATTTTGGACCATAGGCCTTATACGCTCCGTC 547
                                                                                  

consensus_6649#1      ------------------------------------------------------------
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      AATTGATGAGTAAATCAGTGTAGCTTGATCAGACCCACGATTACACTTGACCAACCGAAC 607
                                                                                  

consensus_6649#1      ------------------------------------------------------------
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      AACCTCCCTAGAATTTGTGGGCTTAGCTTTCAGGTACAAAATAAGCTTTGAAGGTAAGGA 667
                                                                                  

consensus_6649#1      ------------------------------------------------------------
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      TCCTGGAGCATCCTTTTTCCCATGGGTCATTTCTACAGTCACCAAATCATCCCACAATAC 727
                                                                                  

consensus_6649#1      ------------------------------------------------------------
consensus_6649#2      ------------------------------------------------------------
consensus_6649#0      ATCCCAGATTACAGAGCACGGATCCTTTGCAGGACTGAACTTTCTCTGGGTCATCATTGG 787
                                                                                  

consensus_6649#1      ------------------------
consensus_6649#2      ------------------------
consensus_6649#0      GACCTGAAGCAGTAGTACTCTTCT 811
                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)