cluster # 6654

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Oryza sativa
cluster # 6654 cluster # 6654 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6654#0 length = 332 sequences # 3

consensus_6654#1 length = 276 sequences # 1

consensusID : consensus_6654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 332
fasta sequence

                              [TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCTCGTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C96955               [TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCTCGTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AA750972             [                                                                                                                                                  GAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCT GTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAt                                                ]
[+] EMBL AU032269             [                                                                                                                                                                                                                       TTAATTTCTGTNTTAACTATGAATCATCCTCGTGCCNGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCNTGTTAAAAAAAAAAAAAAAAAAA             ]




>consensus_6654#0
TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTA
CAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTA
TTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAG
CCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATC
ATCCTCGTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCCTGTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [TTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATGAAATCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCATGCCTGTTTTTATGGGATTTGTTACTGAGCTTTGTNT]

[+] EMBL C73507               [TTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATGAAATCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCATGCCTGTTTTTATGGGATTTGTTACTGAGCTTTGTNT]




>consensus_6654#1
TTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCA
GTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTG
AAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATG
AAATCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCAT
GCCTGTTTTTATGGGATTTGTTACTGAGCTTTGTNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6654#0      TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTA 60
consensus_6654#1      ---------------------------------------------------------TTA 3
                                                                               ***

consensus_6654#0      CAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTA 120
consensus_6654#1      CAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTA 63
                      ************************************************************

consensus_6654#0      TTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAG 180
consensus_6654#1      TTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAG 123
                      ************************************************************

consensus_6654#0      CCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGT-CTTAACTATGAA- 238
consensus_6654#1      CCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATGAAA 183
                      *********************************************  ************ 

consensus_6654#0      TCATCCTCGTGCCAGCAACGGAGA-GGCAACT-GATGTATAAAAAAAATCTATTCATGCC 296
consensus_6654#1      TCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCATGCC 243
                      ********************* *  ******* ***************************

consensus_6654#0      TGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 332
consensus_6654#1      TGTTTTTATGGGATTTGTTACTGAGCTTTGTNT--- 276
                      ****   *    *      *   *