These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 332 fasta sequence [TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCTCGTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C96955 [TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCTCGTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCCTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AA750972 [ GAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGTCTTAACTATGAATCATCCT GTGCCAGCAACGGAGAGGCAACTGATGTATAAAAAAAt ] [+] EMBL AU032269 [ TTAATTTCTGTNTTAACTATGAATCATCCTCGTGCCNGCAACGGAGAGGCAACTGATGTATAAAAAAAATCTATTCATGCNTGTTAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_6654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [TTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATGAAATCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCATGCCTGTTTTTATGGGATTTGTTACTGAGCTTTGTNT] [+] EMBL C73507 [TTACAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTATTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAGCCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATGAAATCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCATGCCTGTTTTTATGGGATTTGTTACTGAGCTTTGTNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6654#0 TNCCTGAAAAGGANCCGAAGGAGGATCCCAAGAAAGATGANCCGAAATTCTCAGCTTTTA 60 consensus_6654#1 ---------------------------------------------------------TTA 3 *** consensus_6654#0 CAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTA 120 consensus_6654#1 CAGGAAGGAAATACTCATTGAAGGGCTGATAGCCAGATAGTGTATTATCACTTATCAGTA 63 ************************************************************ consensus_6654#0 TTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAG 180 consensus_6654#1 TTTCCAGAGACAGACATGATTATGGAGAAGGAGTTTGATTGTTTAGTTACCTCCTTGAAG 123 ************************************************************ consensus_6654#0 CCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGT-CTTAACTATGAA- 238 consensus_6654#1 CCTCTTTTGGTTGGACCAGTGGCATCTTTGAATGTTTAATTTCTGNTCTTAACTATGAAA 183 ********************************************* ************ consensus_6654#0 TCATCCTCGTGCCAGCAACGGAGA-GGCAACT-GATGTATAAAAAAAATCTATTCATGCC 296 consensus_6654#1 TCATCCTCGTGCCAGCAACGGNGNAGGCAACTTGATGTATAAAAAAAATCTATTCATGCC 243 ********************* * ******* *************************** consensus_6654#0 TGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 332 consensus_6654#1 TGTTTTTATGGGATTTGTTACTGAGCTTTGTNT--- 276 **** * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||