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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1185 fasta sequence
[GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA-AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG]
[+] EMBL AK103902 [GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAAT ]
[+] EMBL AK069271 [ AAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTCTGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG]
[+] EMBL AA751077 [ AGTGATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCA TTTTAAGTTAGTACTGGGTACAGCTGTTG TC TTTTTGGCCTGATACCGAATACTCTCAAca ]
consensusID : consensus_6656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAATGAAAAAAAAAAAAGCAATACTTGTATGC]
[+] EMBL CA767190 [GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAATGAAAAAAAAAAAAGCAATACTTGTATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6656#0 GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAA 60
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 CCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACA 120
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 TCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCC 180
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 GCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACC 240
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 CCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCG 300
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 AGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCT 360
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 TCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCA 420
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 AGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG 480
consensus_6656#1 -------------------GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG 41
*****************************************
consensus_6656#0 TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA 540
consensus_6656#1 TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA 101
************************************************************
consensus_6656#0 CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA 600
consensus_6656#1 CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA 161
************************************************************
consensus_6656#0 CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA 660
consensus_6656#1 CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA 221
************************************************************
consensus_6656#0 AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG 720
consensus_6656#1 AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG 281
************************************************************
consensus_6656#0 AGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG 780
consensus_6656#1 AGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG 341
************** *********************************************
consensus_6656#0 CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATG 840
consensus_6656#1 CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATG 401
*************************************************** ********
consensus_6656#0 TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG 900
consensus_6656#1 TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG 461
************************************************************
consensus_6656#0 AAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTT 960
consensus_6656#1 AAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGT 521
****************** ************************************ *
consensus_6656#0 GTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCG 1020
consensus_6656#1 TTCACTCCTTTCTTGCAATGAAAAAAAAAA--------AAGCAATACTTGTATGC----- 568
* ** * * ** * * * ** * ****** ****
consensus_6656#0 CCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGT 1080
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 TAAACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTA 1140
consensus_6656#1 ------------------------------------------------------------
consensus_6656#0 TTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG 1185
consensus_6656#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||