These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1281 fasta sequence [AACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCTAATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAATTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTCGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCC-ATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAG-CCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGGCTTTCAGTTTCTTTAAAAAAAAA] [+] EMBL AK110797 [AACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCTAATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAATTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTCGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCC ATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAG CCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGG ] [+] EMBL AU091537 [ TGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCNATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTNCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTNAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGNCGTCAGAAGAAGGTGTGCATTGGTTNAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGGCTTTCAGTTTCTTTAAAAAAAAA] consensusID : consensus_6659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCCAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAAAAAGGGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAAAATTATTGTGAGCACCGAAATCGATCCTGCGTACTCTCTCTGTGAAGTATTTCTGAGAAAATATATGAGTGGTACTAGTATATATCCCCCTGAAGGGGGTCTAATTAATTGGGGGCCTTTCCCTAGCTCCTTCTCTGAACCTGTCCCGTGAATTGAATCCACAATGTATGTGCTGGGGGTTTACGGCTATTTCCGGACCCACGATAACTGGATAACCCGATTCGGCCTCCCAGTTCTTTTCAGACGCTACGGAGTCCGAGCGCCGGACACCGAGGGGTAATGCTGGACCTCCGCG] [+] EMBL CA755691 [CCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCCAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAAAAAGGGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAAAATTATTGTGAGCACCGAAATCGATCCTGCGTACTCTCTCTGTGAAGTATTTCTGAGAAAATATATGAGTGGTACTAGTATATATCCCCCTGAAGGGGGTCTAATTAATTGGGGGCCTTTCCCTAGCTCCTTCTCTGAACCTGTCCCGTGAATTGAATCCACAATGTATGTGCTGGGGGTTTACGGCTATTTCCGGACCCACGATAACTGGATAACCCGATTCGGCCTCCCAGTTCTTTTCAGACGCTACGGAGTCCGAGCGCCGGACACCGAGGGGTAATGCTGGACCTCCGCG] consensusID : consensus_6659#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [ATATGGCTAGCTAATCCATGAGANAGGTCTAGATAGAGAGAGGGAGANATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTTGTTCTCTCATAATCTNATCTTCTTTGAGGGTAGGTAAATATACTT] [+] EMBL C26486 [ATATGGCTAGCTAATCCATGAGANAGGTCTAGATAGAGAGAGGGAGANATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTTGTTCTCTCATAATCTNATCTTCTTTGAGGGTAGGTAAATATACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6659#0 ----------AACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCT 50 consensus_6659#2 ------------------------------------------------ATATGGCTAGCT 12 consensus_6659#1 CCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCT 60 * ** ****** consensus_6659#0 AATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGATCAGTTCTTCAGAAGAGGCT 110 consensus_6659#2 AATCCATGAGANAGGTCTAGATAGAGAGAGGGAGANATGATCAGTTCTTCAGAAGAGGCT 72 consensus_6659#1 AGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCCAAACAC 120 * * * ** ** *** * * **** ** * * * consensus_6659#0 ACTACTAGCTAT--CTAGCTTCAT-GTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTT 167 consensus_6659#2 ACTACTAGCTAT--CTAGCTTCAT-GTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTT 129 consensus_6659#1 AA-ACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAG 179 * ********* * * ***** * * ** *** **** * ** * *** consensus_6659#0 GT-TGGAGTTGTTAGGAGGAAGAGAGGGGTGAGA---GGTGAGGCTGACAGAAGAGAGTG 223 consensus_6659#2 GT-TGGAGTTGTTAGGAGGAAGAGAGGGGTGAGA---GGTGAGGCT-------------- 171 consensus_6659#1 GCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTT 239 * * * * * *** ** ** *** * **** consensus_6659#0 AGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTC 283 consensus_6659#2 -----------------------------------------------------------C 172 consensus_6659#1 CATAGTCGTCAGAAAAAAGGGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGA 299 consensus_6659#0 ACTTCTCTCTCTG-TCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATA 342 consensus_6659#2 ACTTCTCTCTCTG-TCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATA 231 consensus_6659#1 TCATCTCTGAATGATCAAGAGCCGGATCAAAAATTATTGTGAGCACCGAAATCGATCCTG 359 * ***** ** *** **** ** * * ** ** * * consensus_6659#0 CT-GTTCTCTCATA--TCTATCTTCTTTGAGG-TAGT--AATA-TACTTGAGCAAATTAA 395 consensus_6659#2 CTTGTTCTCTCATAATCTNATCTTCTTTGAGGGTAGGTAAATA-TACTT----------- 279 consensus_6659#1 CGTACTCTCTCTGTGAAGTAT-TTCTGAGAAAATATATGAGTGGTACTAGTATATATCCC 418 * ****** ** **** ** ** * * **** consensus_6659#0 GCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATA 455 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 CCTGAAGGGGGTCTAATTAATTGGGGGCCTTTCCCTAGCTCCTTCTCTGAACCTGTCCCG 478 consensus_6659#0 TGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAAT 515 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 TGAATTGAATCCACAATGTATGTGCTGGGGGTTTACGGCTATTTCCGGACCCACGATAAC 538 consensus_6659#0 TTAATTTCTTGGGGTTTTTGGATCAGTTAATTCGTCTTGAGAGGGGAAGAGATCTCTATG 575 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 TGGATAACCCGATTCGGCCTCCCAGTTCTTTTCAGACGCTACGGAGTCCGAGCGCCGGAC 598 consensus_6659#0 GGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAG 635 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ACCGAGGGGTAATGCTGGACCTCCGCG--------------------------------- 625 consensus_6659#0 CCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATAT 695 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 GATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTC 755 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACG 815 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 GCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATT 875 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 ATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTG 935 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 ACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGCTGTC 995 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 AGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAA 1055 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTA 1115 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATC 1175 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACA 1235 consensus_6659#2 ------------------------------------------------------------ consensus_6659#1 ------------------------------------------------------------ consensus_6659#0 TATAATTGATAAATCAATTTAGGCTTTCAGTTTCTTTAAAAAAAAA 1281 consensus_6659#2 ---------------------------------------------- consensus_6659#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||