These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTNCGGAGAGGTGGACCTGGAGCTGNAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGTATGTTACTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTCTTTNNTTTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCTNNTTTNNTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTTTTGNTNTTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTGTTANGTNTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGTTTNGGTGTNGNTGTTTNTTTNTNGNN] [+] EMBL D43356 [GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTNCGGAGAGGTGGACCTGGAGCTGNAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGTATGTTACTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTCTTTNNTTTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCTNNTTTNNTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTTTTGNTNTTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTGTTANGTNTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGTTTNGGTGTNGNTGTTTNTTTNTNGNN] consensusID : consensus_6664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 524 fasta sequence [GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAGGTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTGCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGATTTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACTGTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA] [-] EMBL CF276660 [GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAGGTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTGCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGATTTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACTGTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA] [+] EMBL BM421021 [ GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAGGTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACCAAAATTAACACTCTTAGCGTCTGCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGATTTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACTGTGGTGTCC AAATGGCAAATCCCATGCTGAACTTTCTCAAAAA] consensusID : consensus_6664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [ATCAGATCGCCGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCCGGTGAGCTTCGTCGCGCAGGGTGAACAGGAGGTCTCCCTGAGCTCCAGAATGTGGAGTCCGGAGAGGTGGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTACAAAATTAACCCTCTTAGCGTCTCAACCAACTATGAATGCCAACTAAAATTTGNCTTTTATCCCGATGTATGTTACTGGATTTTGGTTTACCCTTTGTTTACTGAAATTTTTTACCCTGGTGATGTTCTTCCTGGACTGTGGTGTCCAAATGCCAAACCATCTGAACTTTCTCAAAAA] [+] EMBL BM420744 [ATCAGATCGCCGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCCGGTGAGCTTCGTCGCGCAGGGTGAACAGGAGGTCTCCCTGAGCTCCAGAATGTGGAGTCCGGAGAGGTGGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTACAAAATTAACCCTCTTAGCGTCTCAACCAACTATGAATGCCAACTAAAATTTGNCTTTTATCCCGATGTATGTTACTGGATTTTGGTTTACCCTTTGTTTACTGAAATTTTTTACCCTGGTGATGTTCTTCCTGGACTGTGGTGTCCAAATGCCAAACCATCTGAACTTTCTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6664#1 GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTG 60 consensus_6664#2 ------------------------------------------------------------ consensus_6664#0 -----------------------------------------------------GGACCTG 7 consensus_6664#1 CAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAG 120 consensus_6664#2 ------------------------------------------------------AT-CAG 5 consensus_6664#0 CAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAG 67 ** *** consensus_6664#1 ATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTC 180 consensus_6664#2 ATCGCC--GTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGC-CGGTGAGCTTC 62 consensus_6664#0 ATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGTGAGCGTC 127 **** ************************* ************** ******** ** consensus_6664#1 GTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAG 240 consensus_6664#2 GTCGC--GCAGGGTGAA-CAGGAGGTCTCCCTGAG-CTCCAGAATGTGGAGTCCGGAGAG 118 consensus_6664#0 GTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTNCGGAGAG 187 **** ********** ***************** ** ****** ****** ******* consensus_6664#1 GTGGACCTGGAGCTGGAG-TGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGT 299 consensus_6664#2 GTGGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGT 178 consensus_6664#0 GTGGACCTGGAGCTGNAG-TGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGT 246 *************** ** ***************************************** consensus_6664#1 GTGATCTTCCTCCTTTT-TTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGT 358 consensus_6664#2 GTGATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTAC--AAAATTAACCCTCTTAGCGT 236 consensus_6664#0 GTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGT 306 ******* ** ****** * ***************** ********* ********** consensus_6664#1 CTGCACCAACTATGAATGCGCAACTAAAATG-TTGG--CTTTTATCCCGATG-TATGTTA 414 consensus_6664#2 CTCAACCAACTATGAATGC-CAACTAAAAT--TTGN--CTTTTATCCCGATG-TATGTTA 290 consensus_6664#0 CTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGTATGTTA 366 ** ********* ***** ****** * * *** ************ ******* consensus_6664#1 CTGG--ATTTTGGTGTA---GCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGT 469 consensus_6664#2 CTGG--ATTTTGGTTTA---CCCTTTGT-TTACTGAAATTTTT-TACCCTGG-TGATGTT 342 consensus_6664#0 CTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTCTTTNNT 426 ** * ** *** ** ** * *** *** * * * * consensus_6664#1 CTTCCTGGACTGTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA----- 524 consensus_6664#2 CTTCCTGGACTGTGGTGTCCAAA-TGCCAAA--CCAT-CTGAACTTTCTCAAAAA----- 393 consensus_6664#0 TTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCTNNTTTN 486 ** ** * * * * * * ** * *** * consensus_6664#1 ------------------------------------------------------------ consensus_6664#2 ------------------------------------------------------------ consensus_6664#0 NTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTTTTGNTN 546 consensus_6664#1 ------------------------------------------------------------ consensus_6664#2 ------------------------------------------------------------ consensus_6664#0 TTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTGTTANGT 606 consensus_6664#1 ------------------------------------------------------------ consensus_6664#2 ------------------------------------------------------------ consensus_6664#0 NTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGTTTNGGT 666 consensus_6664#1 -------------------- consensus_6664#2 -------------------- consensus_6664#0 GTNGNTGTTTNTTTNTNGNN 686 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||