These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 911 fasta sequence [CGGAAAGAAACCCTAGACCTCCGTCTCCGGCGACCCTCCCCTCACCTCCTCGCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGCGAATCCGGATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGGGAGATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAG-GTGCTGGATTCGCTCACCAACGACGGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGGGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGGGATCGACATGATGCCACCTCCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGGGGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGATGCTTGTC-GATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTACAATAGAGTAAAATGTGTTTATGATTGCTGTTTATGCTAGCCAGATTCTATGTGACTTGACTGCTAAAAAAA] [+] EMBL AK059081 [CGGAAAGAAACCCTAGACCTCCGTCTCCGGCGACCCTCCCCTCACCTCCTCGCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGCGAATCCGGATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGGGAGATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAG GTGCTGGATTCGCTCACCAACGACGGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGGGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGGGATCGACATGATGCCACCTCCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGGGGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCAAGGAAGAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGATGCTTGTC GATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTACAATAGAGTAAAATGTGTTTATGATTGC ] [+] EMBL C28999 [ aGAGNGTGCTGGATTCGCTCGCCAACGACGGCACCATCGACGCGCTCCG ATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGATATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGAGTTCTAAACACTCCTGGAGCTGAGAAGAAGACCAAGAGGGAGTTGTTTGATGCCCTTCGGCAGGAATTGGAAAATCCAGTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGGAAAGAGATTACTGACACTATTGAGAGTNTCTTCTGCCGCCTCAG GGTATCGACATGATGCCACCTNCACCTTCAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTTCAGAT TGGGGTTAGAAGAGCAAGGAGATT ] [+] EMBL AU182061 [ TCGCCAAGAGAGAGAAAGAAACATGGCTGCAGATGGGNGGTGAGAAGAGCAAGAANATTGATACCCCGGAAAAACCATCGTCATCATCAAGNAACAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGTGCTACAAGCCAGCATGATGGGTCTNAGGATAGCAGCCAGAAGTGATGCTTGTCGGATGCTGCAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAAAAATCCTTCATATCCGTGTAGTTCACAATGTNCAATAGAGTAAAATGTGTTTATGATTGCTGTTTATGCTAGCCAGATTCTATGTGACTTGACTGCTAAAAAAA] consensusID : consensus_6665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGCGACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGNGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNTCGCTCGTCAACGACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGATATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGCTNNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCAGTCCTTNGAAANCTTCAAGGGAAGTCTNGGNCNNATACTTGAGANTGGTNGNCTTTGNTAANAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATATGCCACCTCCACCTTTNAACATCTNNTCCTCTNACCATGANTGTGNNGAAACATTTC] [+] EMBL AA751447 [GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGCGACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTCGACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCGNGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNTCGCTCGTCAACGACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGATATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGCTNNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCAGTCCTTNGAAANCTTCAAGGGAAGTCTNGGNCNNATACTTGAGANTGGTNGNCTTTGNTAANAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATATGCCACCTCCACCTTTNAACATCTNNTCCTCTNACCATGANTGTGNNGAAACATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6665#0 -----------------------------CGGAAAGAAACCCTAGACCTCCGTCTCCGGC 31 consensus_6665#1 GTCCCCCTGGGCTGCAGGNNTTCGGNACGNGGAAAGAAACCCTAGNCCTTCGTCNCCGGC 60 *************** *** **** ***** consensus_6665#0 GACCCTCCCCTCACCTCCTCGCCGCGGCTCCCCCCGCCTGACCTCCGCGCGCCCCCCGTC 91 consensus_6665#1 GACCCTCCCCTNACCTNCTCGCCGCGGCTNCCCCCGCCTGACCTCCGCGCGCCCCCCGTC 120 *********** **** ************ ****************************** consensus_6665#0 GACTCCCCCCCGCGAATCCGGATCCCGCGCGCGCGAGGAAGGAGGGGGGGAGGAGGAGCG 151 consensus_6665#1 GACTCCCCCCCGNGAATCCGGATCCCGCGNGCGCGAGGAAGGAGGGGGGGAGGAGGAGCG 180 ************ **************** ****************************** consensus_6665#0 GGAGATGGGGTCGTCGTCGAAGGTGGTGCGGCCGGAGGAGGTGCTGGATTCGCTCACCAA 211 consensus_6665#1 NGAGATGGGGTCNTTGTCGAAGGTGGTGCGGCCGGNGGNGGTNCTGGNT-CGCTCGTCAA 239 *********** * ******************** ** *** **** * ***** *** consensus_6665#0 CGACGGCACCATCGACGCGCTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGAGGA 271 consensus_6665#1 CGACGGCACCATCGNCGCGNTCCGCATGAAGATCATCGCCCAGCTCAAGGCCAACGNGGA 299 ************** **** ************************************ *** consensus_6665#0 TATGAAGAAAAATACTATGATGATGGTGGAGCAAAGCAGGGTTCTAAACACTCCTGGAGC 331 consensus_6665#1 TATNAAGAAAAAAACCATGACGATGGTGGAGCAAAGCAGNGTTCTAAACACTCCTGGNGC 359 *** ******** ** **** ****************** ***************** ** consensus_6665#0 TGAGAAGAAGACCAAGAGGGAGTTGTTTG--ATGCCCTTCGGCAGGAATTGGAAAATCCA 389 consensus_6665#1 TNNGNAGAAGACCAAGAGGGNGTTTTTTTTTATGCCCTTCGGCAGGAATTGGAAAANCCA 419 * * *************** *** *** ************************* *** consensus_6665#0 GTCCTTGAGAAAGCTTCAAGGGAAGTCTGGGATCTGATACTTGAGAATGGTGGACTGGGG 449 consensus_6665#1 GTCCTTN-GAAANCTTCAAGGGAAGTCTNGGN-CNNATACTTGAGANTGGTNGNCTTTGN 477 ****** **** *************** ** * ********** **** * ** * consensus_6665#0 AAAGAGATTACTGACACTATTGAGAGTGTCTTCTGCCGCCTCAGCGG-GATCGACATGAT 508 consensus_6665#1 TAANAGATTNCTTTCACTANNTNGAGNGGCTTCTTTCNCCCCANNGNTGNTCNACAATAT 537 ** ***** ** ***** *** * ***** * ** ** * * ** *** ** consensus_6665#0 GCCACCTCCACCTT-CAACATCTATTCCTTCTCACCAAGAGAGAGAAAGAAACATGGCTG 567 consensus_6665#1 GCCACCTCCACCTTTNAACATCTNNTCCT-CTNACCATGANTGTGNN-GAAACATTTC-- 593 ************** ******* **** ** **** ** * * ******* * consensus_6665#0 CAGATGGGGGGTGAGAAGAGCAAGGAGATTGATACCCCGGAAAAACCATCGTCATCATCA 627 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 AGGAAGAGACCCTATTCTGATACCACTACAAAAGGGGCAGGTGCTGTACCAAATGGCGGT 687 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 GCTACAAGCCAGCATGATGGGTCTGAGGATAGCAGCCAGAAGTGATGCTTGTCGATGCTG 747 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 CAGAATTTTTTCCTTCCAACAGGCTGAATAAGCCATTGTGTTTTTATGGTTTAATTACAA 807 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 AAATCCTTCATATCCGTGTAGTTCACAATGTACAATAGAGTAAAATGTGTTTATGATTGC 867 consensus_6665#1 ------------------------------------------------------------ consensus_6665#0 TGTTTATGCTAGCCAGATTCTATGTGACTTGACTGCTAAAAAAA 911 consensus_6665#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||