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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[TTCCTCTCCTTATAATAAACGTGTGCCCCGGCCTCCTCTACCTCGGTGCGCGCGGCGNAGCTCTGGTCGCTGGCGCCGGCGCCGGCGATCATCACCAGCTTGTTCCCCATGCAGGCGGCGGTGCANCAGCTGGACCTCCTCCTCGTCGCGCTCCTCTACGGCTGCCTCTTCTCCGGCGCGCTCCTCGCCGCCACGGCGCTCGTGCTGCTCGCGTTCGCGGCGGGCGCGCTGCTCGCCACGGTCGCGCTCGCCGCGTCCGACNCGCGCAGGCTCTTNTTTTTNGTNTNCGCGCGCCGCGCCTCCGANNTCTCGCNGCAATCTGATGCTGGCGCGCGCGCTCTNCGTCTANGCCGTNGTCAAGGCCGCCNTGNGCTCGGGTTCTGGTNGTTCCGCCCCAAANGTNTNCNCTCTTCGCNTCGTCGCGTTTTNTTGNGGNNCTCTGAACTAACAGNTGNAACTTGGGGGCTCTNCNGGTCCCCCTGNNCCGAANANAAATCCTTGTTTTTCNGGCCNGGGGGGAANCTCCCAAA]
[+] EMBL AA751555 [TTCCTCTCCTTATAATAAACGTGTGCCCCGGCCTCCTCTACCTCGGTGCGCGCGGCGNAGCTCTGGTCGCTGGCGCCGGCGCCGGCGATCATCACCAGCTTGTTCCCCATGCAGGCGGCGGTGCANCAGCTGGACCTCCTCCTCGTCGCGCTCCTCTACGGCTGCCTCTTCTCCGGCGCGCTCCTCGCCGCCACGGCGCTCGTGCTGCTCGCGTTCGCGGCGGGCGCGCTGCTCGCCACGGTCGCGCTCGCCGCGTCCGACNCGCGCAGGCTCTTNTTTTTNGTNTNCGCGCGCCGCGCCTCCGANNTCTCGCNGCAATCTGATGCTGGCGCGCGCGCTCTNCGTCTANGCCGTNGTCAAGGCCGCCNTGNGCTCGGGTTCTGGTNGTTCCGCCCCAAANGTNTNCNCTCTTCGCNTCGTCGCGTTTTNTTGNGGNNCTCTGAACTAACAGNTGNAACTTGGGGGCTCTNCNGGTCCCCCTGNNCCGAANANAAATCCTTGTTTTTCNGGCCNGGGGGGAANCTCCCAAA]
consensusID : consensus_6667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[TCCTCCTCTCGCGCTCCTCTACGCTGCCTCTTCTCCGGCGCGCTCCTCCCGCCACGGCGCTCGTCTGCTCGCGTTCGCGGCGGGCGCCCTGCTCGCCCGGTCGCGCTCGCCGCGTCCGACGCGCGCAGGCTCGTCCGGGGCACCCGCGCCCGCGCCCCGACGTCCCGCGGCCAACCTGAGGCTGGCGCGCGCGCTCCCGTCTACGCCGTGGTCAGGCCCCGTGCGCGCGGCGCTGGTGGTCCGCCCCAAGGTCGCCGCGCTCGCGTCGCGCGTCGCCTGGGCGCGCGACGACGGTGACTGGGCTCGCGGTCGCGGCGCGATGAATCTGCTTCGGCGGGGAGCCGAGCGTTTCACTGTTGTAGCATGATGATGTAGTTTAAAGCAGGAGGTGGTGTATGATGTAGCATGCCTCCTTCGAATTCAATAAAATTGAAGGATCTGGGAATGATTTGAAAAAAAA]
[+] EMBL BI801619 [TCCTCCTCTCGCGCTCCTCTACGCTGCCTCTTCTCCGGCGCGCTCCTCCCGCCACGGCGCTCGTCTGCTCGCGTTCGCGGCGGGCGCCCTGCTCGCCCGGTCGCGCTCGCCGCGTCCGACGCGCGCAGGCTCGTCCGGGGCACCCGCGCCCGCGCCCCGACGTCCCGCGGCCAACCTGAGGCTGGCGCGCGCGCTCCCGTCTACGCCGTGGTCAGGCCCCGTGCGCGCGGCGCTGGTGGTCCGCCCCAAGGTCGCCGCGCTCGCGTCGCGCGTCGCCTGGGCGCGCGACGACGGTGACTGGGCTCGCGGTCGCGGCGCGATGAATCTGCTTCGGCGGGGAGCCGAGCGTTTCACTGTTGTAGCATGATGATGTAGTTTAAAGCAGGAGGTGGTGTATGATGTAGCATGCCTCCTTCGAATTCAATAAAATTGAAGGATCTGGGAATGATTTGAAAAAAAA]
consensusID : consensus_6667#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence
[GCCGCGCGCTGGTCCGTCCGGCCGATGATCTGCTTCGCGGGGACCGAGCGTTTCACTGTTGTAGCATGATGATGTATTAAACCAGGAGTGGTGTATGATGTACCATCCCTCCTTCGAATTCAATAAAATTGAAGGATCTGGGAATGATTGAATAAAA]
[+] EMBL BI802763 [GCCGCGCGCTGGTCCGTCCGGCCGATGATCTGCTTCGCGGGGACCGAGCGTTTCACTGTTGTAGCATGATGATGTATTAAACCAGGAGTGGTGTATGATGTACCATCCCTCCTTCGAATTCAATAAAATTGAAGGATCTGGGAATGATTGAATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6667#1 ------------------------------------------------------------
consensus_6667#2 ------------------------------------------------------------
consensus_6667#0 TTCCTCTCCTTATAATAAACGTGTGCCCCGGCCTCCTCTACCTCGGTGCGCGCGGCGNAG 60
consensus_6667#1 ------TCCTCCTCTCGCGCTCCTCTACGCTGCCTCTTCTCCGGCGCGCTCCTCCCGCCA 54
consensus_6667#2 ------------------------------------------------------------
consensus_6667#0 CTCTGGTCGCTGGCGCCGGCGCCGGCGATCATCACCAGCTTGTTCCCCATGCAGGCGGCG 120
consensus_6667#1 CGGCGCTCGTCTGCTCGCGTTCGCGGCGGGCGCCCTGCTCGCCCGGTCGCGCTCGCCGCG 114
consensus_6667#2 ------------------------------------------------------------
consensus_6667#0 GTGCANCAGCTGGACCTCCTCCTCGTCGCGCTCCTCTACGGCTGCCTCTTCTCCGGCGCG 180
consensus_6667#1 TCCGACGCGCGCAGGCTCGTCCGGGGCACCCGCGCCCGCGCCCCGACGTCCCGCGGCCAA 174
consensus_6667#2 ------------------------------------------------------------
consensus_6667#0 CTCCTCGCCGCCACGGCGCTCGTGCTGCTCGCGTTCGCGGCGGGCGCGCTGCTCGCCACG 240
consensus_6667#1 CCTGAGGCTGGCGCGCGCGCTCCCGTCTACGCCGTGGTCAGGCCCCGTGCGCGCGGCGCT 234
consensus_6667#2 ------------------------------------------------------------
consensus_6667#0 GTCGCGCTCGCCGCGTCCGACNCGCGCAGGCTCTTNTTTTTNGTNTNCGCGCGCCGCGCC 300
consensus_6667#1 GGTGGTCCGCCCCAAGGTCGCCGCGCTCGCGTCGCGCGTCGCCTGGGCGCGCGACGACGG 294
consensus_6667#2 ------------------------------------------------------------
consensus_6667#0 TCCGANNTCTCGCNGCAATCTGATGCTGGCG-CGCGCGCTCTNCGTCTANGCCGTNGTCA 359
consensus_6667#1 TGACTGGGCTCGCGGTCGCGGCGCGATGAATCTGCTTCGGCGGGGAGCCGAGCGTTTCAC 354
consensus_6667#2 --GCCGCGCGCTGGTCCGTCCGGCCGATGATCTGCTTCG-CGGGGA-CCGAGCGTTTCAC 56
consensus_6667#0 AGGCCGC-CNTGNGCTCGGGTTCTGGTNGTTCCGCCCCA-AANGTNTNCNCTCTTCGCNT 417
* * * * ** ** ** * * * * * *
consensus_6667#1 TGTTGTAGCATGATGATGTAGTTTAAAGCAGGAGGTGGTGTATGATGTAGCATGC--CTC 412
consensus_6667#2 TGTTGTAGCATGATGATGTA--TTAAACCAGGAG-TGGTGTATGATGTACCATCC--CTC 111
consensus_6667#0 CGTCGCGTTTTNTTGNGGNNCTCTGAACTAACAGNTGNAACTTGGGGGCTCTNCNGGTCC 477
** * * ** * * ** * ** ** ** * * *
consensus_6667#1 CTTCGAATTCAATAAAA--------TTGAAGGATCTGGGAATGATTTGAAAAAAAA 460
consensus_6667#2 CTTCGAATTCAATAAAA--------TTGAAGGATCTGGGAATGATTGAATAAAA-- 157
consensus_6667#0 CCCTGNNCCGAANANAAATCCTTGTTTTTCNGGCCNGGGGGGAANCTCCCAAA--- 530
* * ** * ** ** * * *** * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||