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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1049 fasta sequence
[TTGCTACGCTTCCGCTCCCGTGCCGTGCCATGGCGCCGCTCGTGTCGCTCTCGCTCCCCCTCCCGTGCGCGGTGCCCGCCTCGTCGCTCCCTCCGCGCGCGGAGCCAGACGCCTCGTCGTCCTTCCACCCGCCCGCGTCGTCTTCGTCGTCGCCGCGCGGCGGCCGGCTTGCGCTGGCCGCGGCGCAACCGGGCTCCGGGCGCCGTTGGGTAGGGAGGTGGAGGGCGGGCGTGTCGTCCTTCTCCTTCCTGGCGCCGTTCTTCGCGGGGAACAAGGAGAAGGAGAACCGCGAGAAGGCGGAGAGGCTCAAGGAAGAGCTCCTCGCCACCATCAGGCCGCTCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTC-AAGTCTGATCTCC-TCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTGACACTTTAAGAGCCCAAAATATGGAGACGTGGCCCTATTTTAATCAGGTTACTGCCAACTTGGTACCTCT-CAATTCTAGAAGAGTGGCAGTTCGGTTTGATTACTTCAAAATATTTAATTTGATTTCAATCAAAGCACCTGGCAGTGGTAAAGGTGAACTAGAAATTACATATCTTGATGAAGAGCTCAGGGCCTCAAGAGGCGATAAGGGGAATTTGTTCATACTGAAAATGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGCACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGATGTATTCTAAGACATGTAAATATGAATATTTGAGCATAGTTCTTATAGGATACAATACATCAAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCATTCATCCAAATTCTATAATGAATATCTGCATAACTAGGCA]
[+] EMBL AK070474 [TTGCTACGCTTCCGCTCCCGTGCCGTGCCATGGCGCCGCTCGTGTCGCTCTCGCTCCCCCTCCCGTGCGCGGTGCCCGCCTCGTCGCTCCCTCCGCGCGCGGAGCCAGACGCCTCGTCGTCCTTCCACCCGCCCGCGTCGTCTTCGTCGTCGCCGCGCGGCGGCCGGCTTGCGCTGGCCGCGGCGCAACCGGGCTCCGGGCGCCGTTGGGTAGGGAGGTGGAGGGCGGGCGTGTCGTCCTTCTCCTTCCTGGCGCCGTTCTTCGCGGGGAACAAGGAGAAGGAGAACCGCGAGAAGGCGGAGAGGCTCAAGGAAGAGCTCCTCGCCACCATCAGGCCGCTCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTC AAGTCTGATCTCC TCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTGACACTTTAAGAGCCCAAAATATGGAGACGTGGCCCTATTTTAATCAGGTTACTGCCAACTTGGTACCTCT CAATTCTAGAAGAGTGGCAGTTCGGTTTGATTACTTCAAAATATTTAATTTGATTTCAATCAAAGCACCTGGCAGTGGTAAAGGTGAACTAGAAATTACATATCTTGATGAAGAGCTCAGGGCCTCAAGAGGCGATAAGGGGAATTTGTTCATACTGAAAATGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGCACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGATGTATTCTAAGACATGTAAATATGAATATTTGAGCATAGTTCTTATAGGATACAATACATCAAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCATTCATCCAAATTCTATAATGAATATCTGCATAACTAGGCA]
[+] EMBL AU162717 [ GCCATGGCGCCGCTCGTGTCGCTCTCGCTCCCCCTCCCGTGCGCGGTGCCCGCCTCGTCGCTCCCTCCGCGCGCGGA CCAGACGCCTCGTCGTCCTTCCACCCGCCCGCGTCGTCTTCGTCGTCGCCGCGCGGCGGCCGGCTTGCGCTGGCCGCGGCGCAACCGGGCTCCGGGCGCCGTTGGGTAGGGAGGTGGAGGGCGGGCGTGTCGTCCTTCTCCTTCCTGGCGCCGTTCTTCGCGGGGAACAAGGAGAAGGAGAACCGCGAGAAGGCGGAGAGGCTCAAGGAAGAGCTCCTCGCCACCATCAGGCCGCTCGACCGCGGCGTCGACGCCACGGCGGAGGACAAGGAGCGCGTCGAGAAGATTGTTCAGCAACTGGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAAGTCTGATCTCCTTCAACGGCAAATGGGAGCTTCTCTAAANCAn ]
[+] EMBL AU056766 [ AAATATGGAGACNTGGCCCTATTTTAATCAGGTTACTGCCAACTTGGTACCTCTCCAATTCTAGAAGAGTGGCAGTTCGGTTTGATTACTTCAAAATATTTAATTTGATTTCAATCAAAGCACCTGGCAGTGGTAAAGGTGAACTAGAAATTACATATCTTGATGAAGAGCTCAGGGCCTCAAGAGGCGATAAGGGGAATTTGTTCATACTGAAAATGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGCACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGATGTATTCTAAGACATGTAAATATGAATATTTGAGCATAGTTCTTATAGGATACAATACATCAAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCATTCAaaaaaaaa ]
consensusID : consensus_6669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[GATTCGGCACGAGCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGCACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGATGTATTCTAAGACATGTAAATATGAATATTTGAGCATANTTCTTATAGGATACAATACATCNAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCA]
[+] EMBL AA751834 [GATTCGGCACGAGCGGCACGAGCTCGTGCCGAATTCGGCACGAGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGCACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGATGTATTCTAAGACATGTAAATATGAATATTTGAGCATANTTCTTATAGGATACAATACATCNAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6669#0 TTGCTACGCTTCCGCTCCCGTGCCGTGCCATGGCGCCGCTCGTGTCGCTCTCGCTCCCCC 60
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TCCCGTGCGCGGTGCCCGCCTCGTCGCTCCCTCCGCGCGCGGAGCCAGACGCCTCGTCGT 120
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 CCTTCCACCCGCCCGCGTCGTCTTCGTCGTCGCCGCGCGGCGGCCGGCTTGCGCTGGCCG 180
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 CGGCGCAACCGGGCTCCGGGCGCCGTTGGGTAGGGAGGTGGAGGGCGGGCGTGTCGTCCT 240
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TCTCCTTCCTGGCGCCGTTCTTCGCGGGGAACAAGGAGAAGGAGAACCGCGAGAAGGCGG 300
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 AGAGGCTCAAGGAAGAGCTCCTCGCCACCATCAGGCCGCTCGACCGCGGCGTCGACGCCA 360
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 CGGCGGAGGACAAGGAGCGCGTCGAGAAGATTGTTCAGCAACTGGAGGAGGTGAACCAAG 420
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TGAAGGAGCCACTCAAGTCTGATCTCCTCAACGGCAAATGGGAGCTTCTCTACACCACCT 480
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 CAGAATCCATACTGCAACCACAGAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACC 540
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 AAGCAATCAATACTGACACTTTAAGAGCCCAAAATATGGAGACGTGGCCCTATTTTAATC 600
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 AGGTTACTGCCAACTTGGTACCTCTCAATTCTAGAAGAGTGGCAGTTCGGTTTGATTACT 660
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TCAAAATATTTAATTTGATTTCAATCAAAGCACCTGGCAGTGGTAAAGGTGAACTAGAAA 720
consensus_6669#1 ------------------------------------------------------------
consensus_6669#0 TTACATATCTTGATGAAGAGCTCAGGGCCTCAAGAGGCGATAAGGGGAATTTGTTCATAC 780
consensus_6669#1 ------------------------GATTCGGCACGAGCGGCACGAGCTCGTGCCGAATTC 36
* * * *** * * * * ** *
consensus_6669#0 TGAAAATGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGC 840
consensus_6669#1 GGCACGAGGTTGACCCAACATACAGAGTTCCATTGTAATAATTTCTAAATGCTGATGTGC 96
* * *****************************************************
consensus_6669#0 ACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGAT 900
consensus_6669#1 ACTACAGCTACTATGGCAATTAGGTCCCAGCTGTCCCAAGTATTCTTTTTCAGTCCTGAT 156
************************************************************
consensus_6669#0 GTATTCTAAGACATGTAAATATGAATATTTGAGCATAGTTCTTATAGGATACAATACATC 960
consensus_6669#1 GTATTCTAAGACATGTAAATATGAATATTTGAGCATANTTCTTATAGGATACAATACATC 216
************************************* **********************
consensus_6669#0 AAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCATTCATCCAAAT 1020
consensus_6669#1 NAAAACTGAATCAACTCGATATGTATAGAGCAATGGGATGGTCAGTTCA----------- 265
************************************************
consensus_6669#0 TCTATAATGAATATCTGCATAACTAGGCA 1049
consensus_6669#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||