These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1455 fasta sequence [AATGCGCCCGGTGTCTCCTCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCGCTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGTCTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGGCGGTGCCCATCGACGTCCTCCGCCGCGCCGGCGCGGACGTCACCGTGGCTTCCGCCGATGATGGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCGCTCGTCGCCGGCGGCGACTGCGCCGCCGCTCACTTCGACCTCATCGTCCTCCCGGGAGGGGTTCCAGGCGCGGCGAACCTCGGCGGCTGCGCGGCGCTGGAAGCCATGGTGAGGAGGCACGCGGCGACCGGAGGTCTCTACGCCGCCATCTGCGCCGCGCCGCCGCTGGCGCTGGCGTCCTGGGGCATGCTCAACGGCCTCAAGGCAACTGCTCATCCGCTGTTCGTGGACAAGTTCCCACCGGAGGTGGCCGCCGTGGATGCGAGCGTGGTGGTGGACGCGAGCGCCGTCACGAGCCGTGGCCCGGCGACGTCGACGGAGTTCGCTCTCGCTCTGGTAGAGCAACTCTACAGCAAGAACAAGGCCGAGCAGATCGCAAAAGAAATGCTTGTCAGATACGATGCTGGGTATACCATCGATGAAGTCAACTCGGTTCAATGGAAATGTAACGGCACGCCCAAGGTCCTTGTTCCAGTAGCCAATGGCACCGAGGAGATGGAGCTGATAACAATCATCGACGTCCTGCGCAGAGCCGACGCGGACGTCGTCGTTGCGTCGGCGGAAAACGCCGGCGTCGAGATCGTCGCGCGCCACGGGATGAGGATCGTGGCTGACACGACGCTGGACGAGGCGGCTGCCGATGATCAGACGAGCAGCTTCGACCTGATCATCCTACCGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTT] [+] EMBL AK063270 [AATGCGCCCGGTGTCTCCTCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCGCTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGTCTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGGCGGTGCCCATCGACGTCCTCCGCCGCGCCGGCGCGGACGTCACCGTGGCTTCCGCCGATGATGGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCGCTCGTCGCCGGCGGCGACTGCGCCGCCGCTCACTTCGACCTCATCGTCCTCCCGGGAGGGGTTCCAGGCGCGGCGAACCTCGGCGGCTGCGCGGCGCTGGAAGCCATGGTGAGGAGGCACGCGGCGACCGGAGGTCTCTACGCCGCCATCTGCGCCGCGCCGCCGCTGGCGCTGGCGTCCTGGGGCATGCTCAACGGCCTCAAGGCAACTGCTCATCCGCTGTTCGTGGACAAGTTCCCACCGGAGGTGGCCGCCGTGGATGCGAGCGTGGTGGTGGACGCGAGCGCCGTCACGAGCCGTGGCCCGGCGACGTCGACGGAGTTCGCTCTCGCTCTGGTAGAGCAACTCTACAGCAAGAACAAGGCCGAGCAGATCGCAAAAGAAATGCTTGTCAGATACGATGCTGGGTATACCATCGATGAAGTCAACTCGGTTCAATGGAAATGTAACGGCACGCCCAAGGTCCTTGTTCCAGTAGCCAATGGCACCGAGGAGATGGAGCTGATAACAATCATCGACGTCCTGCGCAGAGCCGACGCGGACGTCGTCGTTGCGTCGGCGGAAAACGCCGGCGTCGAGATCGTCGCGCGCCACGGGATGAGGATCGTGGCTGACACGACGCTGGACGAGGCGGCTGCCGATGATCAGACGAGCAGCTTCGACCTGATCATCCTACCGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTT] [+] EMBL OSS1331A [ TCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCGCTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGTCTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGGCGGTGCCCATCGACGTCCTNCGCCGCGCCGG GCGGACGTCACCGTGGCTTCCGCCGATGATGGCGAACTGGTCGTCGAGGTCATGTACGGCG ] consensusID : consensus_6670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [GAACACTTTCTCTCCTCGTCTCAAACAACAGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTTCTTAATTTATAGCTGATGGATTGATTGATGGATAAAAAAAA] [+] EMBL BM420125 [GAACACTTTCTCTCCTCGTCTCAAACAACAGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCACTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTTCGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTTCCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTTCTTAATTTATAGCTGATGGATTGATTGATGGATAAAAAAAA] consensusID : consensus_6670#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [TNTNGNGTAGCCNGATCGTCGCCGGCACGAGCCGTTGGANGGCGCNGNTGCCATCGACGTCCTCCGCCGCGCCNGCGANCGNTCACCGTGGCTTCCGCCGATGATNGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCTNCGTCGCGGCGNTGTCGCCCCTNCNANCTNTCGACCTCATCGTCCTCCCGGGAGGTTCCANGCGCGGCGAACCTCGGCNGCTGCGCGGCGCTGGAAGCATGGTGAGGAGGCACGCGGC] [+] EMBL OSC601 [TNTNGNGTAGCCNGATCGTCGCCGGCACGAGCCGTTGGANGGCGCNGNTGCCATCGACGTCCTCCGCCGCGCCNGCGANCGNTCACCGTGGCTTCCGCCGATGATNGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCTNCGTCGCGGCGNTGTCGCCCCTNCNANCTNTCGACCTCATCGTCCTCCCGGGAGGTTCCANGCGCGGCGAACCTCGGCNGCTGCGCGGCGCTGGAAGCATGGTGAGGAGGCACGCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6670#0 AATGCGCCCGGTGTCTCCTCCTCCCAACTACACACCCCCGCAATCTCGCTCGCTAGCTCG 60 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CTGATCGATCAAGCTCAAGCTCAAGCTAGCTTCGGTCGTCGGCAATGGCGGCGCAGGCGT 120 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CTCCTCCAACGAAGAAGGTGTTGGTGCCGATCGTCGCCGGCACGGAGCCGGTGGAGGCGG 180 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CGGTGCCCATCGACGTCCTCCGCCGCGCCGGCGCGGACGTCACCGTGGCTTCCGCCGATG 240 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 ATGGCGAGCTGGTCGTCGAGGTCATGTACGGCGTCAGGATCGTCGCGGACGCGCTCGTCG 300 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CCGGCGGCGACTGCGCCGCCGCTCACTTCGACCTCATCGTCCTCCCGGGAGGGGTTCCAG 360 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 GCGCGGCGAACCTCGGCGGCTGCGCGGCGCTGGAAGCCATGGTGAGGAGGCACGCGGCGA 420 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CCGGAGGTCTCTACGCCGCCATCTGCGCCGCGCCGCCGCTGGCGCTGGCGTCCTGGGGCA 480 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 TGCTCAACGGCCTCAAGGCAACTGCTCATCCGCTGTTCGTGGACAAGTTCCCACCGGAGG 540 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 TGGCCGCCGTGGATGCGAGCGTGGTGGTGGACGCGAGCGCCGTCACGAGCCGTGGCCCGG 600 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CGACGTCGACGGAGTTCGCTCTCGCTCTGGTAGAGCAACTCTACAGCAAGAACAAGGCCG 660 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 AGCAGATCGCAAAAGAAATGCTTGTCAGATACGATGCTGGGTATACCATCGATGAAGTCA 720 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 ACTCGGTTCAATGGAAATGTAACGGCACGCCCAAGGTCCTTGTTCCAGTAGCCAATGGCA 780 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CCGAGGAGATGGAGCTGATAACAATCATCGACGTCCTGCGCAGAGCCGACGCGGACGTCG 840 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 TCGTTGCGTCGGCGGAAAACGCCGGCGTCGAGATCGTCGCGCGCCACGGGATGAGGATCG 900 consensus_6670#1 ------------------------------------------------------------ consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 TGGCTGACACGACGCTGGACGAGGCGGCTGCCGATGATCAGACGAGCAGCTTCGACCTGA 960 consensus_6670#1 ----------------------------------------GAACACTTTCTCTCCTCGTC 20 consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 TCATCCTACCGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCA 1020 consensus_6670#1 TCAAACAACAGGGTGGCACGCCTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCA 80 consensus_6670#2 -------------------------------------------TNTNGNGTAGCCNGATC 17 * * *** * consensus_6670#0 CTCTACTGAAGAAGCAGGCGG-CGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACG 1079 consensus_6670#1 CTCTACTGAAGAAGCAGGCGG-CGGCGAGCAAGCCCTACGGCGCCATTGGCGCCGCGACG 139 consensus_6670#2 GTCGCCGGCACGAGCCGTTGGANGGCGCNGNTGCCAT-CGACGTCCTC--CGCCGCGCCN 74 ** * * * *** * ** **** *** * ** ** * * ******* * consensus_6670#0 GCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGC 1139 consensus_6670#1 GCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGATGGC 199 consensus_6670#2 GC------GANCGNTCACCGTGGCTTCCGCCGATGATNGCGAGCTGGTCGTCGAGGTCAT 128 ** * ** * ** ** * * * * * *** * ** * * consensus_6670#0 GGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACC 1199 consensus_6670#1 GGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACC 259 consensus_6670#2 G--TACGGCGTCAGGATCGTCGCGGACGCTN-CGTCGCGGCGNTGTCGCCCCTNCNANCT 185 * *** * ** * * ** * * * * * * ** * * consensus_6670#0 GGCACCGCCATGGAGTTCGCCGTGGCCGCCGT-CGAGAAGCTGCTCGGCCGCGACGTGGC 1258 consensus_6670#1 GGCACCGCCATGGAGTTCGCCGTGGCCGCCGT-CGAGAAGCTGCTCGGCCGCGACGTGGC 318 consensus_6670#2 NTCGACCTCATCGTCCTCCCGGGAGGTTCCANGCGCGGCGAACCTCGGCNGCTGCGCGGC 245 * * *** * ** * * * ** ** * * ****** ** ** *** consensus_6670#0 GCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGAT 1318 consensus_6670#1 GCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGATCTTCTGTTGGTTTTAGGTGAT 378 consensus_6670#2 GCTGGAAGC-ATGGTGAGGAGGCACGCGGC------------------------------ 274 ** * * ** * ** ** consensus_6670#0 CAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTT 1378 consensus_6670#1 CAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCCTT 438 consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 CCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAA 1438 consensus_6670#1 CCAAGAAAAAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAA 498 consensus_6670#2 ------------------------------------------------------------ consensus_6670#0 ACTTATAAGGGTGTTTT----------------------------------------- 1455 consensus_6670#1 ACTTATAAGGGTGTTTTCTTAATTTATAGCTGATGGATTGATTGATGGATAAAAAAAA 556 consensus_6670#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||