|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1354 fasta sequence
[CCAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAGCTCATGCCGCTCGCGGGCATGGCTCTCCTCCAGCTCCGGGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCGGGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCTTCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACTTCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGGGGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACCTGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGATTCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACAATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGTTGGATGTTGTAAAAAAAAAAAAAAAAA]
[+] EMBL AK070087 [CCAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAGCTCATGCCGCTCGCGGGCATGGCTCTCCTCCAGCTCCGGGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCGGGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCTTCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACTTCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGGGGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACCTGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGATTCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACAATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGTTGGATGT ]
[+] EMBL AK104708 [ CAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAGCTCATGCCGCTCGCGGGCATGGCTCTCCTCCAGCTCCGGGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCGGGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCTTCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACTTCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGGGGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACCTGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGATTCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACAATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGC ]
[-] EMBL CA760103 [ GGCGAACACCGTNGTNTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGCAGAACAATGAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCCCAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGTTGGATGTTGTAAAAAAAAAAAAAAAAA]
consensusID : consensus_6671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[GGGAACGAGGANNCTTGCAGGGAGGCTCATGCCGCTCGCGGGGCATGGCTCTCCTCCAGCTCCGAAGAGGCACTGCTCCCTCCCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGACGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGANGCCGGCGGGAAGGTCACCTCNAATCCATCGTGGTGGCCATCNACGACTTCAACAACCGCAACCCCTTCTTCCTTGGCCGGGCGTGTCGTCTGGCTCGTGGCA]
[+] EMBL AA751842 [GGGAACGAGGANNCTTGCAGGGAGGCTCATGCCGCTCGCGGGGCATGGCTCTCCTCCAGCTCCGAAGAGGCACTGCTCCCTCCCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGACGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGANGCCGGCGGGAAGGTCACCTCNAATCCATCGTGGTGGCCATCNACGACTTCAACAACCGCAACCCCTTCTTCCTTGGCCGGGCGTGTCGTCTGGCTCGTGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6671#0 CCAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAG-CTCATGCCGCTCGCGGG-C 58
consensus_6671#1 ----------------GGGAACGAGGANNCTTGCAGGGAGGCTCATGCCGCTCGCGGGGC 44
* * *********** ***************** *
consensus_6671#0 ATGGCTCTCCTCCAGCTCCG--GGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCG 116
consensus_6671#1 ATGGCTCTCCTCCAGCTCCGAAGAGGCACTGCTCCCTCC-CCCAAATCCCCTCAGACCCG 103
******************** * ************** ********************
consensus_6671#0 CGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCT 176
consensus_6671#1 CGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCT 163
************************************************************
consensus_6671#0 CAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGG 236
consensus_6671#1 CAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGG 223
************************************************************
consensus_6671#0 TGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCC 296
consensus_6671#1 TGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGACGCGTTCCTCTTCC 283
********************************************* **************
consensus_6671#0 CCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCG 356
consensus_6671#1 CCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGANGCCGGCG 343
**************************************************** *******
consensus_6671#0 GGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCT 416
consensus_6671#1 GGAAGGTCA-CCTCNAATCCATCGTGGTGGCCATCNACGACTTCAACAACCGCAACCCCT 402
********* **** * ****************** ************************
consensus_6671#0 TCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACT 476
consensus_6671#1 TCTTCCTTGGCCGGGCG-TGT-CGTCTGGCTCGTGGCA---------------------- 438
***** * * * ***** *** ***************
consensus_6671#0 TCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGG 536
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 GGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACC 596
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 TGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGAT 656
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 TCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTG 716
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 ACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGG 776
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 AAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGA 836
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 AATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACT 896
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 CTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTA 956
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 CCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCA 1016
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 ATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATT 1076
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 ACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACA 1136
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 ATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTG 1196
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 CAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAG 1256
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 AGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAAT 1316
consensus_6671#1 ------------------------------------------------------------
consensus_6671#0 CTTATGTTTGTTGGATGTTGTAAAAAAAAAAAAAAAAA 1354
consensus_6671#1 --------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||