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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1317 fasta sequence
[TTTTTCTTTTTTTTTTCATAGGCATTTTCGTGGCCTTTCGCCCTGGACACCTGCCTCTTCCTATGGCCTGTGGCTCGCCGCGATGGCGCCGCCGCCGCACGCGCTCGCCGCCGCCGCAACCTCCGCGCTCGGGGTAGCGGTGGGGGTGCGGCTGCTCCTCGTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTGGCCGCCGCCACGTCCGCCGCGGCGGCCGCGCTCAAGACCCCGCGCGTGCTGGCCGCCGCCTCGTCCCCGCTCGCCGCGGTCCTCGCGGCGTCCAAGGCCGCCTCCAAGTCCTACAAGGCCGCGCGCACGCTCGGCCCCGCCGCGCGCCTCCCTTCCCTCCCCTCCGACAAGCGCCTCAAGGCCGCCTTCGCCGCCGCCTCGCTCCTCCGCCTCGCCGCCGCCGCGCCGCCCCCCGTCGCGTCCCCCACCGGCGTCGCGGCCCTCGCGATACTCAAGTCTGGGTACAAGCTCTCCAAGAACTCGGCCAAGGTCATCGAGGGTTTCCTCGGCCTCCAGGTGCACAAGGGCATCAGGAATGGTGTCGACGCGCTCGGGGTGGTCGTCAAGGTCGCCGTCATCGCCTCCGAGGTCGCCGTATGGGTCGGCGGCCGATGCTGGGGCGGCCGGCGTGGGCGCTCCGTGCGATTTCTCTGCTCTACCCGCCCGAGCGGTTTACTCCTTGTTCGGTACAGCAAATCTGAAGCCCAAGTTGTGCTCTTTGATCATGGACTTGGAATAGCTGCGATGGATGGAGATGAGAAGCAGATGGAGGAGCAAGAGGGCTCTGATTTACTCTGCCTCGCGGTACCTGTGCCTGAGGCAACAAATTATTAGTGAGTTAGCACTTGGCACAAAACT-GTTGTACAATTGCATATATCAGATATTGTCATGTAGAGATGGCTTTGAATTTTGCCTCGTGCCGAATTCGGCACGAGGCACACTAGCTTAGCTTGTGGCAGCGCACTACGCTTCTAGAAGAAATGGCCCATTTACTGGATCTTTCACGTCTCGTTGTGAACTTGTAAAAGGAAAATGTATGGTGCGCGTGACGTTCGTCTAGCTTGGAAGTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTCCGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTGTATGTCTCCTTGCATACTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGACTCTGAATGGTTCTATAGTTGGAGTTTTTCTTTGAGAGGAAGGCACC]
[+] EMBL AK070427 [TTTTTCTTTTTTTTTTCATAGGCATTTTCGTGGCCTTTCGCCCTGGACACCTGCCTCTTCCTATGGCCTGTGGCTCGCCGCGATGGCGCCGCCGCCGCACGCGCTCGCCGCCGCCGCAACCTCCGCGCTCGGGGTAGCGGTGGGGGTGCGGCTGCTCCTCGTCCTCTCCCGCTCGCGCGCGCTCAAGCCGCTGGCCGCCGCCACGTCCGCCGCGGCGGCCGCGCTCAAGACCCCGCGCGTGCTGGCCGCCGCCTCGTCCCCGCTCGCCGCGGTCCTCGCGGCGTCCAAGGCCGCCTCCAAGTCCTACAAGGCCGCGCGCACGCTCGGCCCCGCCGCGCGCCTCCCTTCCCTCCCCTCCGACAAGCGCCTCAAGGCCGCCTTCGCCGCCGCCTCGCTCCTCCGCCTCGCCGCCGCCGCGCCGCCCCCCGTCGCGTCCCCCACCGGCGTCGCGGCCCTCGCGATACTCAAGTCTGGGTACAAGCTCTCCAAGAACTCGGCCAAGGTCATCGAGGGTTTCCTCGGCCTCCAGGTGCACAAGGGCATCAGGAATGGTGTCGACGCGCTCGGGGTGGTCGTCAAGGTCGCCGTCATCGCCTCCGAGGTCGCCGTATGGGTCGGCGGCCGATGCTGGGGCGGCCGGCGTGGGCGCTCCGTGCGATTTCTCTGCTCTACCCGCCCGAGCGGTTTACTCCTTGTTCGGTACAGCAAATCTGAAGCCCAAGTTGTGCTCTTTGATCATGGACTTGGAATAGCTGCGATGGATGGAGATGAGAAGCAGATGGAGGAGCAAGAGGGCTCTGATTTACTCTGCCTCGCGGTACCTGTGCCTGAGGCAACAAATTATTAGTGAGTTAGCACTTGGCACAAAACT GTTGTACAATTGCATATATCAGATATTGTCATGTAGAGATGGCTTTGA ]
[+] EMBL CB681035 [ CAAATTCTTTTTGAGTTAGCACTTGGCACAAAACTCGTTGTACAATTGCATATATCAGATATTGTCATGTAGAGATGGCTTTGAATTTTGCCTCGTGCCGAATTCGGCACGAGGCACACTAGCTTAGCTTGTGGCAGCGCACTACGCTTCTAGAAGAAATGGCCCATTTACTGGATCTTTCACGTCTCGTTGTGAACTTGTAAAAGGAAAATGTATGGTGCGCGTGACGTTCGTCTAGCTTGGAAGTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTCCGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTGTATGTCTCCTTGCATACTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGACTCTGAATGGTTCTATAGTTGGAGTTTTTCTTTGAGAGGAAGGCACC]
consensusID : consensus_6674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[TCCGGCAGCCACTAGGCACGCACACTAGCTTAGCTTGTGGCAGCGCACTACGCTTCTAGAAGAAATGGCCCTTTACTGGTCTTTCACGTCTCGTTGTGAACTTGTAAAAGGAAAATGTATGGTGCGCGTGACGTTCGTCTAGCTTGGAAGTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTCCGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTGTATGTCTCCTTGCATACTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA]
[+] EMBL AU071126 [TCCGGCAGCCACTAGGCACGCACACTAGCTTAGCTTGTGGCAGCGCACTACGCTTCTAGAAGAAATGGCCCTTTACTGGTCTTTCACGTCTCGTTGTGAACTTGTAAAAGGAAAATGTATGGTGCGCGTGACGTTCGTCTAGCTTGGAAGTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTCCGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTGTATGTCTCCTTGCATACTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAA]
consensusID : consensus_6674#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence
[TCGGCACGAGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTCCGGNGNTAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGNTAGTGATTTGTATGTCTCCTTGCATACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGACTCTGAATGGTTCTATAGTTGGAGTTTTTCTTTGAGAGGAAGGCACCAGATTATCCCATTTCTAAGTCGTCATACCAGACTTTAATATATATATGAACATGCTAGAAGTT]
[+] EMBL AA751878 [TCGGCACGAGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTCCGGNGNTAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGNTAGTGATTTGTATGTCTCCTTGCATACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGACTCTGAATGGTTCTATAGTTGGAGTTTTTCTTTGAGAGGAAGGCACCAGATTATCCCATTTCTAAGTCGTCATACCAGACTTTAATATATATATGAACATGCTAGAAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6674#0 TTTTTCTTTTTTTTTTCATAGGCATTTTCGTGGCCTTTCGCCCTGGACACCTGCCTCTTC 60
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 CTATGGCCTGTGGCTCGCCGCGATGGCGCCGCCGCCGCACGCGCTCGCCGCCGCCGCAAC 120
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 CTCCGCGCTCGGGGTAGCGGTGGGGGTGCGGCTGCTCCTCGTCCTCTCCCGCTCGCGCGC 180
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GCTCAAGCCGCTGGCCGCCGCCACGTCCGCCGCGGCGGCCGCGCTCAAGACCCCGCGCGT 240
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GCTGGCCGCCGCCTCGTCCCCGCTCGCCGCGGTCCTCGCGGCGTCCAAGGCCGCCTCCAA 300
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GTCCTACAAGGCCGCGCGCACGCTCGGCCCCGCCGCGCGCCTCCCTTCCCTCCCCTCCGA 360
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 CAAGCGCCTCAAGGCCGCCTTCGCCGCCGCCTCGCTCCTCCGCCTCGCCGCCGCCGCGCC 420
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GCCCCCCGTCGCGTCCCCCACCGGCGTCGCGGCCCTCGCGATACTCAAGTCTGGGTACAA 480
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GCTCTCCAAGAACTCGGCCAAGGTCATCGAGGGTTTCCTCGGCCTCCAGGTGCACAAGGG 540
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 CATCAGGAATGGTGTCGACGCGCTCGGGGTGGTCGTCAAGGTCGCCGTCATCGCCTCCGA 600
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GGTCGCCGTATGGGTCGGCGGCCGATGCTGGGGCGGCCGGCGTGGGCGCTCCGTGCGATT 660
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 TCTCTGCTCTACCCGCCCGAGCGGTTTACTCCTTGTTCGGTACAGCAAATCTGAAGCCCA 720
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 AGTTGTGCTCTTTGATCATGGACTTGGAATAGCTGCGATGGATGGAGATGAGAAGCAGAT 780
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GGAGGAGCAAGAGGGCTCTGATTTACTCTGCCTCGCGGTACCTGTGCCTGAGGCAACAAA 840
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 TTATTAGTGAGTTAGCACTTGGCACAAAACTGTTGTACAATTGCATATATCAGATATTGT 900
consensus_6674#1 ------------------------------------------------------------
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 CATGTAGAGATGGCTTTGAATTTTGCCTCGTGCCGAATTCGGCACGAGGCACACTAGCTT 960
consensus_6674#1 -------------------------TCCGGCAGCCA-CTAGGCACG---CACACTAGCTT 31
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 AGCTTGTGGCAGCGCACTACGCTTCTAGAAGAAATGGCCCATTTACTGGATCTTTCACGT 1020
consensus_6674#1 AGCTTGTGGCAGCGCACTACGCTTCTAGAAGAAATGGCCC-TTTACTGG-TCTTTCACGT 89
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 CTCGTTGTGAACTTGTAAAAGGAAAATGTATGGTGCGCGTGACGTTCGTCTAGCTTGGAA 1080
consensus_6674#1 CTCGTTGTGAACTTGTAAAAGGAAAATGTATGGTGCGCGTGACGTTCGTCTAGCTTGGAA 149
consensus_6674#2 ------------------------------------------------------------
consensus_6674#0 GTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTC 1140
consensus_6674#1 GTGTCCGCACGTATGACCTGGTGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTC 209
consensus_6674#2 -------------TCGGCACGAGCGCGGTGCTTGATAGCATAGGTTAACTTATACTAGTC 47
* * * **************************************
consensus_6674#0 CGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTG 1200
consensus_6674#1 CGGAGATAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGATAGTGATTTG 269
consensus_6674#2 CGGNGNTAAGGCTGAGAGCCACAACAATAATGGAGCAGAGACCAGGAAGNTAGTGATTTG 107
*** * ******************************************* **********
consensus_6674#0 TATGTCTCCTTGCATACTCTTCTTCTTCTTC----------------------------- 1231
consensus_6674#1 TATGTCTCCTTGCATACTCTTCTTCTTCTTC----------------------------- 300
consensus_6674#2 TATGTCTCCTTGCATACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT 167
*******************************
consensus_6674#0 -AGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGACTCTGAATGGTTCTATAGTT 1290
consensus_6674#1 -AGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGAAAAAAAAAAAAAAAAAAAAA 359
consensus_6674#2 CAGTGTGTGGTGAATGCAGATGGTGTGGGCAGTTTGTGGACTCTGAATGGTTCTATAGTT 227
*************************************** ** * *
consensus_6674#0 GGAGTTTTTCTTTGAGAGGAAGGCACC--------------------------------- 1317
consensus_6674#1 AAAAANAAAAA------------------------------------------------- 370
consensus_6674#2 GGAGTTTTTCTTTGAGAGGAAGGCACCAGATTATCCCATTTCTAAGTCGTCATACCAGAC 287
*
consensus_6674#0 ------------------------------
consensus_6674#1 ------------------------------
consensus_6674#2 TTTAATATATATATGAACATGCTAGAAGTT 317
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||