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Oryza sativa
cluster # 6676 cluster # 6676       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6676#0 length = 1140 sequences # 3  
consensus_6676#1 length = 665 sequences # 1  

consensusID : consensus_6676#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1140
fasta sequence
                              [TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA-GTATAGTAT-TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAATTACTTTTTAAAAAAAA]

[+] EMBL AK071178             [TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA GTATAGTAT TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAA                 ]
[-] EMBL CB664105             [                                                                                                                                                                                                                                                                                                                        TATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA GTATAGTAT TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCCCCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAAT                ]
[+] EMBL BM419998             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTGAATGCATCCTGTGGCTCACGTATAGTATGTCATTAC ATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCCAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAA TAAAAT TCCAGAT TCCAAATGTATACTAC AACAGATCTCCTTATATACTGAGATATTGATC ATACATGTACATTTACTTTTTAAAAAAAA]


>consensus_6676#0 TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAG TTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTA CATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAG CATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAA GGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCG AGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTT CATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTA TTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTT AGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTT ATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACC AGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCAGTATA GTATTCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCA CCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCT TACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCT GTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGT ACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACG TGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAA TCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAA CAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAATTACTTTTTAAAAAAAA



consensusID : consensus_6676#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGTCCGTG]

[+] EMBL CB664104             [GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGTCCGTG]


>consensus_6676#1 GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAA CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGT CCGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6676#0      -----------------------------TGCTGCTGCTGTTCTCCCCTCCCGGATTGAA 31
consensus_6676#1      GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAA 60
                                                    * *  ** *         * *   ******

consensus_6676#0      CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG 91
consensus_6676#1      CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG 120
                      ************************************************************

consensus_6676#0      CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG 151
consensus_6676#1      CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG 180
                      ************************************************************

consensus_6676#0      CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG 211
consensus_6676#1      CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG 240
                      ************************************************************

consensus_6676#0      GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC 271
consensus_6676#1      GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC 300
                      ************************************************************

consensus_6676#0      CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA 331
consensus_6676#1      CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA 360
                      ************************************************************

consensus_6676#0      GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC 391
consensus_6676#1      GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC 420
                      ************************************************************

consensus_6676#0      GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG 451
consensus_6676#1      GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG 480
                      ************************************************************

consensus_6676#0      GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT 511
consensus_6676#1      GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT 540
                      ************************************************************

consensus_6676#0      GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG 571
consensus_6676#1      GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG 600
                      ************************************************************

consensus_6676#0      AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGG 631
consensus_6676#1      AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAA-GTTCACTCCTTTGAGG 659
                      ******************************************* ****************

consensus_6676#0      TCCGTGAATGCATCCTGTGGCTCAGTATAGTATTCATTACAATCCTGTGCACACCACAAC 691
consensus_6676#1      TCCGTG------------------------------------------------------ 665
                      ******                                                      

consensus_6676#0      CAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGA 751
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      AAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAG 811
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      TGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAG 871
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      TAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAA 931
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      GAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGC 991
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      AAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAA 1051
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      TGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCA 1111
consensus_6676#1      ------------------------------------------------------------
                                                                                  

consensus_6676#0      ATACATGTACAATTACTTTTTAAAAAAAA 1140
consensus_6676#1      -----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)