These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1140 fasta sequence [TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA-GTATAGTAT-TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAATTACTTTTTAAAAAAAA] [+] EMBL AK071178 [TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA GTATAGTAT TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAA ] [-] EMBL CB664105 [ TATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA GTATAGTAT TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCCCCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAAT ] [+] EMBL BM419998 [ GTGAATGCATCCTGTGGCTCACGTATAGTATGTCATTAC ATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCCAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAA TAAAAT TCCAGAT TCCAAATGTATACTAC AACAGATCTCCTTATATACTGAGATATTGATC ATACATGTACATTTACTTTTTAAAAAAAA] consensusID : consensus_6676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGTCCGTG] [+] EMBL CB664104 [GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGTCCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6676#0 -----------------------------TGCTGCTGCTGTTCTCCCCTCCCGGATTGAA 31 consensus_6676#1 GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAA 60 * * ** * * * ****** consensus_6676#0 CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG 91 consensus_6676#1 CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG 120 ************************************************************ consensus_6676#0 CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG 151 consensus_6676#1 CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG 180 ************************************************************ consensus_6676#0 CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG 211 consensus_6676#1 CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG 240 ************************************************************ consensus_6676#0 GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC 271 consensus_6676#1 GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC 300 ************************************************************ consensus_6676#0 CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA 331 consensus_6676#1 CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA 360 ************************************************************ consensus_6676#0 GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC 391 consensus_6676#1 GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC 420 ************************************************************ consensus_6676#0 GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG 451 consensus_6676#1 GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG 480 ************************************************************ consensus_6676#0 GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT 511 consensus_6676#1 GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT 540 ************************************************************ consensus_6676#0 GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG 571 consensus_6676#1 GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG 600 ************************************************************ consensus_6676#0 AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGG 631 consensus_6676#1 AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAA-GTTCACTCCTTTGAGG 659 ******************************************* **************** consensus_6676#0 TCCGTGAATGCATCCTGTGGCTCAGTATAGTATTCATTACAATCCTGTGCACACCACAAC 691 consensus_6676#1 TCCGTG------------------------------------------------------ 665 ****** consensus_6676#0 CAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGA 751 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 AAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAG 811 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 TGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAG 871 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 TAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAA 931 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 GAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGC 991 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 AAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAA 1051 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 TGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCA 1111 consensus_6676#1 ------------------------------------------------------------ consensus_6676#0 ATACATGTACAATTACTTTTTAAAAAAAA 1140 consensus_6676#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||