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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6676#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1140 fasta sequence
[TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA-GTATAGTAT-TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAATTACTTTTTAAAAAAAA]
[+] EMBL AK071178 [TGCTGCTGCTGTTCTCCCCTCCCGGATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA GTATAGTAT TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAA ]
[-] EMBL CB664105 [ TATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGGTCCGTGAATGCATCCTGTGGCTCA GTATAGTAT TCATTACAATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCCCCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAATGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCAATACATGTACAAT ]
[+] EMBL BM419998 [ GTGAATGCATCCTGTGGCTCACGTATAGTATGTCATTAC ATCCTGTGCACACCACAACCAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGAAAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCCAAGGAATGGCATGGTTACCAGTGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAGTAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAAGAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGCAAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAA TAAAAT TCCAGAT TCCAAATGTATACTAC AACAGATCTCCTTATATACTGAGATATTGATC ATACATGTACATTTACTTTTTAAAAAAAA]
consensusID : consensus_6676#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGTCCGTG]
[+] EMBL CB664104 [GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAACTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGGCTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTGCTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAGGTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTCCTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAAGAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCCGCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAGGAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCTGTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTGAAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAGTTCACTCCTTTGAGGTCCGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6676#0 -----------------------------TGCTGCTGCTGTTCTCCCCTCCCGGATTGAA 31
consensus_6676#1 GCTCCTCATCTGCAAGCTGTTTCTGATCGAGTTCTTGATTCCGCGTGGTGCTATATTGAA 60
* * ** * * * ******
consensus_6676#0 CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG 91
consensus_6676#1 CTGTTGGCAAGTTCTGAAGGACTCTCCAGTTATTGGAGAAATGTGTGGACGGCTTGCAGG 120
************************************************************
consensus_6676#0 CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG 151
consensus_6676#1 CTGATGAGCATCCAGACATGCTGACGCTACATGGAACCGCTCTGTTCATTAGGCCGAGTG 180
************************************************************
consensus_6676#0 CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG 211
consensus_6676#1 CTTACCAAGAGGTCAAGTCATCACCAAAGCATGCCATAGTTCCTCATAACAACCTATTAG 240
************************************************************
consensus_6676#0 GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC 271
consensus_6676#1 GTTGCAGTGCGTTTTATAATCCAGTGGAAGGGCATCATGTGCAGAAGCCGCACATCGTTC 300
************************************************************
consensus_6676#0 CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA 331
consensus_6676#1 CTAGCTGCAAAGTTAACTTTACCAGGGCGAGCCATTATCTCTATAGAAGTTTAAGTGAAA 360
************************************************************
consensus_6676#0 GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC 391
consensus_6676#1 GAACTACAAGGCATTGGCTGCATCGGTTTCATGTTAACGCTTCGTCGGATGAGGACTTCC 420
************************************************************
consensus_6676#0 GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG 451
consensus_6676#1 GCTCATCACGCAATATAGCAATCAGCCTATTCAAGCGATATAAAAATGTCATTGACCGAG 480
************************************************************
consensus_6676#0 GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT 511
consensus_6676#1 GAGGTGGAGATAACCTGAAGGAGTTTGTTAGTGCTGGGGTGAATGCATATGCTCTAGGCT 540
************************************************************
consensus_6676#0 GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG 571
consensus_6676#1 GTACTGAAGAGGGGCTCAGGAAGGAACTTATGGATATTGAAGATTCTGGCCTTGAGATTG 600
************************************************************
consensus_6676#0 AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAAAGTTCACTCCTTTGAGG 631
consensus_6676#1 AAGCTCTGCGGTCCAATGGAGGAGGAACCAGCTTGACCTTCAA-GTTCACTCCTTTGAGG 659
******************************************* ****************
consensus_6676#0 TCCGTGAATGCATCCTGTGGCTCAGTATAGTATTCATTACAATCCTGTGCACACCACAAC 691
consensus_6676#1 TCCGTG------------------------------------------------------ 665
******
consensus_6676#0 CAACGATCATCAGATGGTCTACTACCCCACCAGTGTCAGCTGACGTTTTGCATCAGTGGA 751
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 AAGGATTTTGTGCCTTAATAGCGAACGCTTACTATACCAAAGGAATGGCATGGTTACCAG 811
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TGAAAACTTTGCAGCTGGAACAAATGGCTGTCACGGGCAGTTCAGAGGAGCCATCAGTAG 871
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TAGCTAGTCGCATGCAATTAGTTTTCAGTACATTAGAGGTAGTTAGTCCTCAATGGCCAA 931
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 GAGTGTGATGAACTGAAACTGAAAGCACGTGTGCAGTTTTACTACATGCTCATGTCTGGC 991
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 AAAGAGGAAAAAATGGCATCAGGAACGAATCATTTTTTTTCCTTCCAATTTGAAGTAAAA 1051
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 TGTCCAGATGTGCAAATGTATACTACAAACAGATCTCCTTATATACTGAGATATTGATCA 1111
consensus_6676#1 ------------------------------------------------------------
consensus_6676#0 ATACATGTACAATTACTTTTTAAAAAAAA 1140
consensus_6676#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||