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Oryza sativa
cluster # 6678 cluster # 6678       Sequences # 4       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6678#0 length = 3073 sequences # 2  
 consensus_6678#1 length = 584 sequences # 1  
consensus_6678#2 length = 352 sequences # 1  
consensusID : consensus_6678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3073
fasta sequence 
                              [CCCAAACCCCAGCCACTTCGCCGCCGCAGCCGCCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGACCGCCGCCGCCGCAGCCATCATGGACCCGCGATTCCCGCCGCCGGCGCCGTCCGGGGGAGCGCCGCCGAGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCATCCGGCTGCCCGATGCCGACCTGCTGCTCGACCCGGACGGCGAGTTCGGATTCTCCGACCTCGACTTCCCTTCCCTCTCCGACGACTCCCCCGCGGCGTCCGACCCGACCCCGCCTCCTCCCCCGCCGGCGCTGCCGCAGGCGGCGCCGCGGCCGCCTGGGGGTGCACACCTGAGGAGCCTCTCCCTCGACGCCGCGTTCTTCGATGGCCTCGCGTTCCAGGGAGGAGGAGGGGGTGGTGGTGCTGGGAGTGGGAGTAGCGGCGGTGGGGCTGGGCATAAGAGGAGCGGGTCGATGGATGGGGAGAGCTCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCCGCCGATAGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCGAACAGGCAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTCCAGGTATGCATTATAGCTCAAGCTTGTGGTGCCTCTGCAACTACTACCATAAAAGTGAGGCTAGTGCTCTATCTGATCAGTTGATTTTTTGTTTGGCTATGCTTTTCTTATTCTCTTGTATCAGACCTGATATTAGCAGCTGGAATAACCGGATTTCCCTTTAGATACATTGATGCAGTATTGTTTCAGCTTACACATCATTTGACTAACATCAATTTCTACTTGACACTGTCCAGTGCAACCAATTTACTGTCCACTAGCAGTTTTTGGGATGGACGATCACAAAAAAATTACTGTATTCTTTGATTGCTTCAACATTGATTGTTTTTACTTGATTGTTACAGCTGTTGTACATTGGCTTCTGAGTTTTTCTTTCTTTAATTTTCCTTTTTAACAACGAGCTCCTGCACAGAACCACCTCTAGTTCCTTCGAGTTCAAAGTTGCTAGCTCTTCTGGAGTTCTGGTACGATTGTTCAGGCGTACTGGGATGCTATGATCATAAAAAGTGTTAGTCTCTGTTTGGTTGTATTTATTCTCAACTGTGAGTACCGCTATAGTTCTGTACTTGCAAATTGCACTTTCCAGGACAAGCAGGTTTAGGAATTTTCTTGCTATTTTGAATTTATAATTTTCACTGGTACTTGACTATTTACATGAAAAATGTTAGGCTGCTTAGATGTTCGCTTTGACAAGACCAAATTATTACTTTTTCATAGTGTACTAAAAATACCATGAACAGATATAGTTCTCTCCCTGCATATTCTGTATACTAAATTGGATATGTAATGGGATCAGAAGGATTTTTTTTCTTGCAAACTGCCACTGCATACATTTGTATTTCAGAGAATGTCAGTGAGAATTGAATTTATTGATATGCTAGCTTTTGTAACGGCTTATCCCAAAAATTCCATAATATCTTATCTAGGTCATCTAGCCCTTGAACAGTTAAGCACATCCTATCAGTTCACACTTTTTGAACCAGAGATTTTTGATTTTGGAGAGAGCCTATGGTAGTCCTGCTTACAGGGAGAATAAGCTGATCTACCGGCTTTATATGATTTGTAAATATGGAATAGCTGTCTTGTGAATTTATCATTCGAGAGCTAACAAATTATAATGAGTAACCATAAGTTTTGTAGTCTTTTACTCCGCAAATATTACAAGTTTGTTTCAGGAAAACATAGTTGAGCCTGAACACATTATGCATTTTTTCTTAATTTTCTTTTGTCTGCAAGTGTTCTTGTAGCCGATGTGACAACTGAAGGATTTATTGCACCCAAAAGTAGGGTCATAATGCTGATGCCTATATACTTTATAGGTTGGTCATGTCAGAAACAGGGTTATTGATGCTATATTTGAAAGCTGGTTTGATTAAAGATGATGAAATTAGGTGGGGGGTTGAAACTTTGGTTTGGTGGTCAGGGATAACAGCTGGTGTTTATCTTGCTCCACAAAGCTTCACTAAGTTTTTTATATAGGGAATCAAGAAGTCAGGACTAGTGATTTTTTTTTGGGGGGAAATTAGTGTTTTTACTCCTTGTTAATGTTATTTCTAACTAAAATCACTTTAAATTTTACTCTGCTGCTAACAATAAAGATCATGTTTCTGATTGTGCATCAGTCTCATCCGCTAATGTTAATGTTTTCAGCGTTTGAATGTTCTATCTTATGGTTTTTTGATTTTCTAATTATCTTTTGCTCACACATTCCTAATTTTATACCCTTTTTCATCTTGGAATTTACTTATGGTCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCCATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAGGACTC---CAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGATTTCATGTGAGCAGGACTCAAGCACACCTCAAGTTGCACGCTAACTGCAACTCATGTACTGTAAAGATAGCTGATGTATACCATATGCATATATGAATCATTCGTAGGGTAGCTAGCTGATCTTTGTACCATTACTGAAAATGCAATTCATCCTCCTGTTCAATCATCTGTTAATGCCTTAGTCTGAAGGTTGAAAGAACTGTGTTTAACATGTTTGCGACGGTTGTTTTGTAAAGATGTTGTTATAGTGAATGGAATGGGTTCTGA]

[+] EMBL AK099600             [CCCAAACCCCAGCCACTTCGCCGCCGCAGCCGCCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGACCGCCGCCGCCGCAGCCATCATGGACCCGCGATTCCCGCCGCCGGCGCCGTCCGGGGGAGCGCCGCCGAGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCATCCGGCTGCCCGATGCCGACCTGCTGCTCGACCCGGACGGCGAGTTCGGATTCTCCGACCTCGACTTCCCTTCCCTCTCCGACGACTCCCCCGCGGCGTCCGACCCGACCCCGCCTCCTCCCCCGCCGGCGCTGCCGCAGGCGGCGCCGCGGCCGCCTGGGGGTGCACACCTGAGGAGCCTCTCCCTCGACGCCGCGTTCTTCGATGGCCTCGCGTTCCAGGGAGGAGGAGGGGGTGGTGGTGCTGGGAGTGGGAGTAGCGGCGGTGGGGCTGGGCATAAGAGGAGCGGGTCGATGGATGGGGAGAGCTCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCCGCCGATAGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCGAACAGGCAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTCCAGGTATGCATTATAGCTCAAGCTTGTGGTGCCTCTGCAACTACTACCATAAAAGTGAGGCTAGTGCTCTATCTGATCAGTTGATTTTTTGTTTGGCTATGCTTTTCTTATTCTCTTGTATCAGACCTGATATTAGCAGCTGGAATAACCGGATTTCCCTTTAGATACATTGATGCAGTATTGTTTCAGCTTACACATCATTTGACTAACATCAATTTCTACTTGACACTGTCCAGTGCAACCAATTTACTGTCCACTAGCAGTTTTTGGGATGGACGATCACAAAAAAATTACTGTATTCTTTGATTGCTTCAACATTGATTGTTTTTACTTGATTGTTACAGCTGTTGTACATTGGCTTCTGAGTTTTTCTTTCTTTAATTTTCCTTTTTAACAACGAGCTCCTGCACAGAACCACCTCTAGTTCCTTCGAGTTCAAAGTTGCTAGCTCTTCTGGAGTTCTGGTACGATTGTTCAGGCGTACTGGGATGCTATGATCATAAAAAGTGTTAGTCTCTGTTTGGTTGTATTTATTCTCAACTGTGAGTACCGCTATAGTTCTGTACTTGCAAATTGCACTTTCCAGGACAAGCAGGTTTAGGAATTTTCTTGCTATTTTGAATTTATAATTTTCACTGGTACTTGACTATTTACATGAAAAATGTTAGGCTGCTTAGATGTTCGCTTTGACAAGACCAAATTATTACTTTTTCATAGTGTACTAAAAATACCATGAACAGATATAGTTCTCTCCCTGCATATTCTGTATACTAAATTGGATATGTAATGGGATCAGAAGGATTTTTTTTCTTGCAAACTGCCACTGCATACATTTGTATTTCAGAGAATGTCAGTGAGAATTGAATTTATTGATATGCTAGCTTTTGTAACGGCTTATCCCAAAAATTCCATAATATCTTATCTAGGTCATCTAGCCCTTGAACAGTTAAGCACATCCTATCAGTTCACACTTTTTGAACCAGAGATTTTTGATTTTGGAGAGAGCCTATGGTAGTCCTGCTTACAGGGAGAATAAGCTGATCTACCGGCTTTATATGATTTGTAAATATGGAATAGCTGTCTTGTGAATTTATCATTCGAGAGCTAACAAATTATAATGAGTAACCATAAGTTTTGTAGTCTTTTACTCCGCAAATATTACAAGTTTGTTTCAGGAAAACATAGTTGAGCCTGAACACATTATGCATTTTTTCTTAATTTTCTTTTGTCTGCAAGTGTTCTTGTAGCCGATGTGACAACTGAAGGATTTATTGCACCCAAAAGTAGGGTCATAATGCTGATGCCTATATACTTTATAGGTTGGTCATGTCAGAAACAGGGTTATTGATGCTATATTTGAAAGCTGGTTTGATTAAAGATGATGAAATTAGGTGGGGGGTTGAAACTTTGGTTTGGTGGTCAGGGATAACAGCTGGTGTTTATCTTGCTCCACAAAGCTTCACTAAGTTTTTTATATAGGGAATCAAGAAGTCAGGACTAGTGATTTTTTTTTGGGGGGAAATTAGTGTTTTTACTCCTTGTTAATGTTATTTCTAACTAAAATCACTTTAAATTTTACTCTGCTGCTAACAATAAAGATCATGTTTCTGATTGTGCATCAGTCTCATCCGCTAATGTTAATGTTTTCAGCGTTTGAATGTTCTATCTTATGGTTTTTTGATTTTCTAATTATCTTTTGCTCACACATTCCTAATTTTATACCCTTTTTCATCTTGGAATTTACTTATGGTCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCCATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAGGACTC   CAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGATTTCATGTGAGCAGGACTCAAGCACACCTCAAGTTGCACGCTAACTGCAACTCATGTACTGTAAAGATAGCTGATGTATACCATATGCATATATGAATCATTCGTAGGGTAGCTAGCTGATCTTTGTACCATTACTGAAAATGCAATTCATCCTCCTGTTCAATCATCTGTTAATGCCTTAGTCTGAAGGTTGAAAGAACTGTGTTTAACATGTTTGCGACGGTTGTTTTGTAAAGATGTTGTTATAGTGAATGGAATGG       ]
[+] EMBL CA764240             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAGGACTCCAGCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGATTTCATGTGAGCAGGATTCAAGCACACCTCAAGTTGCACGCTAACTGCAACTCATGTACTGTAAAGATAGCTGATGTATACCATATGCATATATGAATCATTCGTAGGGTAGCTAGCTGATCTTTGTACCATTACTGAAAATGCAATTCATCCTCCTGTTCAATCATCTGTTAATGCCTTAGTCTGAAGGTTGAAAGAACTGTGTTTAACGTGTTTGCGACGGTTGTTTTGTAAAGATGTTGTTATAGTGAATGGAATGGGTTCTGA]




>consensus_6678#0
CCCAAACCCCAGCCACTTCGCCGCCGCAGCCGCCGCAGCAGCAGCCGCCTCTCGCCGGCG
TTGACCGCCGCCGCCGCAGCCATCATGGACCCGCGATTCCCGCCGCCGGCGCCGTCCGGG
GGAGCGCCGCCGAGGGGGCACCACCGGCGGGCGCACTCGGAGACGTTCATCCGGCTGCCC
GATGCCGACCTGCTGCTCGACCCGGACGGCGAGTTCGGATTCTCCGACCTCGACTTCCCT
TCCCTCTCCGACGACTCCCCCGCGGCGTCCGACCCGACCCCGCCTCCTCCCCCGCCGGCG
CTGCCGCAGGCGGCGCCGCGGCCGCCTGGGGGTGCACACCTGAGGAGCCTCTCCCTCGAC
GCCGCGTTCTTCGATGGCCTCGCGTTCCAGGGAGGAGGAGGGGGTGGTGGTGCTGGGAGT
GGGAGTAGCGGCGGTGGGGCTGGGCATAAGAGGAGCGGGTCGATGGATGGGGAGAGCTCG
CTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCCGCCGATAGG
CTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCGAACAGGCAA
TCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAGAGGAAGGTG
CAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTCCAGGTATGC
ATTATAGCTCAAGCTTGTGGTGCCTCTGCAACTACTACCATAAAAGTGAGGCTAGTGCTC
TATCTGATCAGTTGATTTTTTGTTTGGCTATGCTTTTCTTATTCTCTTGTATCAGACCTG
ATATTAGCAGCTGGAATAACCGGATTTCCCTTTAGATACATTGATGCAGTATTGTTTCAG
CTTACACATCATTTGACTAACATCAATTTCTACTTGACACTGTCCAGTGCAACCAATTTA
CTGTCCACTAGCAGTTTTTGGGATGGACGATCACAAAAAAATTACTGTATTCTTTGATTG
CTTCAACATTGATTGTTTTTACTTGATTGTTACAGCTGTTGTACATTGGCTTCTGAGTTT
TTCTTTCTTTAATTTTCCTTTTTAACAACGAGCTCCTGCACAGAACCACCTCTAGTTCCT
TCGAGTTCAAAGTTGCTAGCTCTTCTGGAGTTCTGGTACGATTGTTCAGGCGTACTGGGA
TGCTATGATCATAAAAAGTGTTAGTCTCTGTTTGGTTGTATTTATTCTCAACTGTGAGTA
CCGCTATAGTTCTGTACTTGCAAATTGCACTTTCCAGGACAAGCAGGTTTAGGAATTTTC
TTGCTATTTTGAATTTATAATTTTCACTGGTACTTGACTATTTACATGAAAAATGTTAGG
CTGCTTAGATGTTCGCTTTGACAAGACCAAATTATTACTTTTTCATAGTGTACTAAAAAT
ACCATGAACAGATATAGTTCTCTCCCTGCATATTCTGTATACTAAATTGGATATGTAATG
GGATCAGAAGGATTTTTTTTCTTGCAAACTGCCACTGCATACATTTGTATTTCAGAGAAT
GTCAGTGAGAATTGAATTTATTGATATGCTAGCTTTTGTAACGGCTTATCCCAAAAATTC
CATAATATCTTATCTAGGTCATCTAGCCCTTGAACAGTTAAGCACATCCTATCAGTTCAC
ACTTTTTGAACCAGAGATTTTTGATTTTGGAGAGAGCCTATGGTAGTCCTGCTTACAGGG
AGAATAAGCTGATCTACCGGCTTTATATGATTTGTAAATATGGAATAGCTGTCTTGTGAA
TTTATCATTCGAGAGCTAACAAATTATAATGAGTAACCATAAGTTTTGTAGTCTTTTACT
CCGCAAATATTACAAGTTTGTTTCAGGAAAACATAGTTGAGCCTGAACACATTATGCATT
TTTTCTTAATTTTCTTTTGTCTGCAAGTGTTCTTGTAGCCGATGTGACAACTGAAGGATT
TATTGCACCCAAAAGTAGGGTCATAATGCTGATGCCTATATACTTTATAGGTTGGTCATG
TCAGAAACAGGGTTATTGATGCTATATTTGAAAGCTGGTTTGATTAAAGATGATGAAATT
AGGTGGGGGGTTGAAACTTTGGTTTGGTGGTCAGGGATAACAGCTGGTGTTTATCTTGCT
CCACAAAGCTTCACTAAGTTTTTTATATAGGGAATCAAGAAGTCAGGACTAGTGATTTTT
TTTTGGGGGGAAATTAGTGTTTTTACTCCTTGTTAATGTTATTTCTAACTAAAATCACTT
TAAATTTTACTCTGCTGCTAACAATAAAGATCATGTTTCTGATTGTGCATCAGTCTCATC
CGCTAATGTTAATGTTTTCAGCGTTTGAATGTTCTATCTTATGGTTTTTTGATTTTCTAA
TTATCTTTTGCTCACACATTCCTAATTTTATACCCTTTTTCATCTTGGAATTTACTTATG
GTCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGT
CCATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTC
AGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAG
GACTCCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGC
ACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGA
ACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGATTTCATGTGAGCAG
GACTCAAGCACACCTCAAGTTGCACGCTAACTGCAACTCATGTACTGTAAAGATAGCTGA
TGTATACCATATGCATATATGAATCATTCGTAGGGTAGCTAGCTGATCTTTGTACCATTA
CTGAAAATGCAATTCATCCTCCTGTTCAATCATCTGTTAATGCCTTAGTCTGAAGGTTGA
AAGAACTGTGTTTAACATGTTTGCGACGGTTGTTTTGTAAAGATGTTGTTATAGTGAATG
GAATGGGTTCTGA

consensusID : consensus_6678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence 
                              [GAGAGCTCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCCGCCGATAGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCGAACAGGCAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTCCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCCATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAGGACTCCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGA]

[+] EMBL AY224425             [GAGAGCTCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCCGCCGATAGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCGAACAGGCAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAGAGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTCCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCCATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAGGACTCCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGA]




>consensus_6678#1
GAGAGCTCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCC
GCCGATAGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCG
AACAGGCAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAG
AGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTC
CAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCC
ATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAG
CGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATGGAGGA
CTCCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGATGCAC
TACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTTGAAC
GGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGA

consensusID : consensus_6678#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence 
                              [GCAGCCGCCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGACGCCGCCGCCGCAAGCCATCATGGACCCGCGAATTCCGCCGCCCGGGCCGTCCGGGGGAGCGCCCGCCGAGGGGCACCACCGGCGGGCGCACTCGGAAACATTCATCCGGCTGCCCGACGCCAACTGCTGCTCGACCCGGAACGGGATTTCGGATTCTCCGACCTCACTTCCCTTCCCTCTCCGAAAAANTCCCCCGCGGCGTCTCGAACCCGACACCCGCCTCCTCCCCCCGCCGGGCGCTGTCCGCAGGCGGGNGCCCGGCCGCCTGGGGGTTCACACCTAAGAACTCTCCCTCAACCGTTCTTCCATGCT]

[+] EMBL AA751933             [GCAGCCGCCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGACGCCGCCGCCGCAAGCCATCATGGACCCGCGAATTCCGCCGCCCGGGCCGTCCGGGGGAGCGCCCGCCGAGGGGCACCACCGGCGGGCGCACTCGGAAACATTCATCCGGCTGCCCGACGCCAACTGCTGCTCGACCCGGAACGGGATTTCGGATTCTCCGACCTCACTTCCCTTCCCTCTCCGAAAAANTCCCCCGCGGCGTCTCGAACCCGACACCCGCCTCCTCCCCCCGCCGGGCGCTGTCCGCAGGCGGGNGCCCGGCCGCCTGGGGGTTCACACCTAAGAACTCTCCCTCAACCGTTCTTCCATGCT]




>consensus_6678#2
GCAGCCGCCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGACGCCGCCGCCGCAAGCCATCA
TGGACCCGCGAATTCCGCCGCCCGGGCCGTCCGGGGGAGCGCCCGCCGAGGGGCACCACC
GGCGGGCGCACTCGGAAACATTCATCCGGCTGCCCGACGCCAACTGCTGCTCGACCCGGA
ACGGGATTTCGGATTCTCCGACCTCACTTCCCTTCCCTCTCCGAAAAANTCCCCCGCGGC
GTCTCGAACCCGACACCCGCCTCCTCCCCCCGCCGGGCGCTGTCCGCAGGCGGGNGCCCG
GCCGCCTGGGGGTTCACACCTAAGAACTCTCCCTCAACCGTTCTTCCATGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6678#0      ------------------------------------------------------------
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      GAGAGCTCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCC 60
                                                                                  

consensus_6678#0      ------------------------------------------------------------
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      GCCGATAGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCG 120
                                                                                  

consensus_6678#0      ----------------------------CCCAAACCCCAGCCACTTCGCCGCCGCAGCCG 32
consensus_6678#2      -----------------------------------------------------GCAGCCG 7
consensus_6678#1      AACAGGCAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAG 180
                                                                           ** *  *

consensus_6678#0      CCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGACC-GCCGCCGCCGCA-GCCATCATGGAC 90
consensus_6678#2      CCGCAGCAGCAGCCGCCTCTCGCCGGCGTTGAC--GCCGCCGCCGCAAGCCATCATGGAC 65
consensus_6678#1      AGGAAGGTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTC 240
                        * **  **** ***  *   * *  *    *  **   *  * **   **   **  *

consensus_6678#0      CCGCGATTCCCGCC-GCCGGCGCCGTCCGGGG--GAGCGCCGC---CGAGGGGGCA--CC 142
consensus_6678#2      CCGCGAATTCCGCC-GCCCGGGCCGTCCGGGG--GAGCGCCCG---CCGAGGGGCA--CC 117
consensus_6678#1      CAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGCAGTCC 300
                      * * *     ** * * *    * *    *    *** **          *  ***  **

consensus_6678#0      ACCGGCGGGCGC-----ACTCGGAGACGTTCATCCGGCTGCCCGATGCCGACCTGCTGCT 197
consensus_6678#2      ACCGGCGGGCGC-----ACTCGGAAACATTCATCCGGCTGCCCGACGCCAAC-TGCTGCT 171
consensus_6678#1      ATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAGTTCAG 360
                      *  *  *  *       ***  ** *   **     *  **** * *   *   * *   

consensus_6678#0      CGACCCGG---ACGGCGAGTTCGGATTCTCCGACCTCGACTTCCCTTCCCTCTCCGACGA 254
consensus_6678#2      CGACCCGG---AACGGGATTTCGGATTCTCCGACCTC-ACTTCCCTTCCCTCTCCGAAAA 227
consensus_6678#1      CGGCTTAAGATAGCGGCAGGCCAAGTTC-CAAACATGAACGGAAACTCCTTCAATGGAGG 419
                      ** *       *  *  *   *   *** *  ** *  **      *** **   *    

consensus_6678#0      -CTCCCCC-GCGGCGTCC--GACCCGAC-CCCGCCTCCTCCCCC-GCCGG-CGCTG-CCG 306
consensus_6678#2      ANTCCCCC-GCGGCGTCTCGAACCCGACACCCGCCTCCTCCCCCCGCCGGGCGCTGTCCG 286
consensus_6678#1      ACTCCAGCAGCAGCAGCA-GCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAG-ATG 477
                        ***  * ** **  *    * * **  **  ***  * * *    * *  ** *   *

consensus_6678#0      CAGGCGGCGCCGCGGCCGCCTGGGGGTGCA----CACCTGAGGAGCCTCT-----CCCTC 357
consensus_6678#2      CAGGCGGGNGCCCGGCCGCCTGGGGGTTCA----CACCTAAGAA--CTCT-----CCCTC 335
consensus_6678#1      CAC-TACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTTT 536
                      **           **** ** ***    **    ****  *  *  * *       * * 

consensus_6678#0      GACGCCGCGTTCTTCGATGGCCTCGCGTTCCAGGGAGGAGGAGGGGGTGGTGGTGCTGGG 417
consensus_6678#2      AAC----CGTTCTTCCATGCT--------------------------------------- 352
consensus_6678#1      GAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGA------------ 584
                       *      *    ** ***                                         

consensus_6678#0      AGTGGGAGTAGCGGCGGTGGGGCTGGGCATAAGAGGAGCGGGTCGATGGATGGGGAGAGC 477
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TCGCTGTTCGAGGGCGAGTCCGCGCCGCCCGACTACGCCAAGAAGGCCATGCCCGCCGAT 537
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      AGGCTCGCCGAGCTCGCGCTCCTCGACCCCAAGCGCGCGAAGAGGATTCTGGCGAACAGG 597
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CAATCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTACACCGGTGAGCTGGAGAGGAAG 657
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GTGCAGACGCTGCAGACAGAGGCAACCACGCTTTCAACACAGCTCACGCTGCTCCAGGTA 717
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TGCATTATAGCTCAAGCTTGTGGTGCCTCTGCAACTACTACCATAAAAGTGAGGCTAGTG 777
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CTCTATCTGATCAGTTGATTTTTTGTTTGGCTATGCTTTTCTTATTCTCTTGTATCAGAC 837
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CTGATATTAGCAGCTGGAATAACCGGATTTCCCTTTAGATACATTGATGCAGTATTGTTT 897
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CAGCTTACACATCATTTGACTAACATCAATTTCTACTTGACACTGTCCAGTGCAACCAAT 957
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTACTGTCCACTAGCAGTTTTTGGGATGGACGATCACAAAAAAATTACTGTATTCTTTGA 1017
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTGCTTCAACATTGATTGTTTTTACTTGATTGTTACAGCTGTTGTACATTGGCTTCTGAG 1077
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTTTTCTTTCTTTAATTTTCCTTTTTAACAACGAGCTCCTGCACAGAACCACCTCTAGTT 1137
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CCTTCGAGTTCAAAGTTGCTAGCTCTTCTGGAGTTCTGGTACGATTGTTCAGGCGTACTG 1197
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GGATGCTATGATCATAAAAAGTGTTAGTCTCTGTTTGGTTGTATTTATTCTCAACTGTGA 1257
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GTACCGCTATAGTTCTGTACTTGCAAATTGCACTTTCCAGGACAAGCAGGTTTAGGAATT 1317
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTCTTGCTATTTTGAATTTATAATTTTCACTGGTACTTGACTATTTACATGAAAAATGTT 1377
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      AGGCTGCTTAGATGTTCGCTTTGACAAGACCAAATTATTACTTTTTCATAGTGTACTAAA 1437
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      AATACCATGAACAGATATAGTTCTCTCCCTGCATATTCTGTATACTAAATTGGATATGTA 1497
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATGGGATCAGAAGGATTTTTTTTCTTGCAAACTGCCACTGCATACATTTGTATTTCAGAG 1557
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      AATGTCAGTGAGAATTGAATTTATTGATATGCTAGCTTTTGTAACGGCTTATCCCAAAAA 1617
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTCCATAATATCTTATCTAGGTCATCTAGCCCTTGAACAGTTAAGCACATCCTATCAGTT 1677
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CACACTTTTTGAACCAGAGATTTTTGATTTTGGAGAGAGCCTATGGTAGTCCTGCTTACA 1737
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GGGAGAATAAGCTGATCTACCGGCTTTATATGATTTGTAAATATGGAATAGCTGTCTTGT 1797
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GAATTTATCATTCGAGAGCTAACAAATTATAATGAGTAACCATAAGTTTTGTAGTCTTTT 1857
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ACTCCGCAAATATTACAAGTTTGTTTCAGGAAAACATAGTTGAGCCTGAACACATTATGC 1917
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATTTTTTCTTAATTTTCTTTTGTCTGCAAGTGTTCTTGTAGCCGATGTGACAACTGAAGG 1977
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATTTATTGCACCCAAAAGTAGGGTCATAATGCTGATGCCTATATACTTTATAGGTTGGTC 2037
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATGTCAGAAACAGGGTTATTGATGCTATATTTGAAAGCTGGTTTGATTAAAGATGATGAA 2097
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATTAGGTGGGGGGTTGAAACTTTGGTTTGGTGGTCAGGGATAACAGCTGGTGTTTATCTT 2157
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GCTCCACAAAGCTTCACTAAGTTTTTTATATAGGGAATCAAGAAGTCAGGACTAGTGATT 2217
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTTTTTTGGGGGGAAATTAGTGTTTTTACTCCTTGTTAATGTTATTTCTAACTAAAATCA 2277
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CTTTAAATTTTACTCTGCTGCTAACAATAAAGATCATGTTTCTGATTGTGCATCAGTCTC 2337
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATCCGCTAATGTTAATGTTTTCAGCGTTTGAATGTTCTATCTTATGGTTTTTTGATTTTC 2397
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TAATTATCTTTTGCTCACACATTCCTAATTTTATACCCTTTTTCATCTTGGAATTTACTT 2457
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATGGTCAGAGGGACACGTCTGGCCTAACTGCTGAGAACAGAGAGCTCAAACTCCGGTTGC 2517
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      AGTCCATGGAAGAACAAGCTAAACTTCGAGATGCTCTGAATGACGCCCTACGAGAAGAAG 2577
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTCAGCGGCTTAAGATAGCGGCAGGCCAAGTTCCAAACATGAACGGAAACTCCTTCAATG 2637
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      GAGGACTCCAGCAGCAGCAGCAGCAGCAGATGCCGACCTATTTCTCGCAGCAGCAGCAGA 2697
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TGCACTACTTAAGTGGCCACCAGGGACGTCATCACCACCCAAATAATCCCCATAACTCTT 2757
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TGAACGGAGGCCAATCGATGAGCGGCCAGACCCTAAATGACTCCATGGATTTCATGTGAG 2817
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      CAGGACTCAAGCACACCTCAAGTTGCACGCTAACTGCAACTCATGTACTGTAAAGATAGC 2877
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TGATGTATACCATATGCATATATGAATCATTCGTAGGGTAGCTAGCTGATCTTTGTACCA 2937
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TTACTGAAAATGCAATTCATCCTCCTGTTCAATCATCTGTTAATGCCTTAGTCTGAAGGT 2997
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      TGAAAGAACTGTGTTTAACATGTTTGCGACGGTTGTTTTGTAAAGATGTTGTTATAGTGA 3057
consensus_6678#2      ------------------------------------------------------------
consensus_6678#1      ------------------------------------------------------------
                                                                                  

consensus_6678#0      ATGGAATGGGTTCTGA 3073
consensus_6678#2      ----------------
consensus_6678#1      ----------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)