These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1009 fasta sequence [CCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACTCTCCCCTCTCCCCCTCCTCCTCCTCCTGCTTCACCCGCCTCTCGTGTGCCCAGATCTGGCAGATGAAACGCTTGATTTCTCATTTGGTTTGATTTTGATTCTTCTCATCTCTGATTTGGGATGTGGGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGTGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAGGTGAAGAAATTCAGAGCTACTCTGCAGGTCCAGAGACGGAGTAGTTTTGACTCTGCATCTTGAATCTAGATAACAGCA] [+] EMBL AK059403 [CCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACTCTCCCCTCTCCCCCTCCTCCTCCTCCTGCTTCACCCGCCTCTCGTGTGCCCAGATCTGGCAGATGAAACGCTTGATTTCTCATTTGGTTTGATTTTGATTCTTCTCATCTCTGATTTGGGATGTGGGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGTGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAGGTGAAGAAATTCAGAGCTACTCTGCAGGTCCAGAGACGGAGTAGTTTTGACTCTGCATCTTGAATCTAGATAACAGCA] [+] EMBL AU075753 [ CTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGTTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAA CCTGG AATTTTAGTAG ACNTCGA TA TAGTGT GATTT CG AAG GTAA NTGT AATTG GCAA ] consensusID : consensus_6683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [CCCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGT] [+] EMBL AK102002 [CCCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGAGCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTTTGAGGGGGAGGAGGTGAGTGCAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGTGCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACACCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGGCGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCTACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCTTCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGT] consensusID : consensus_6683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GGTTAANANNGGGGNAGGGAATAATCAGTGAGNGGNGGNANAAAAGGGGGAGCACCAAGCATNTCCAATNACAGCAGGGCCGNACTAAGCTTGGAGTTCAAGGGACCAAGACTAATAATTCATNTGCAGTTACGGTACTGNTTCGGCGGCATGCGCTTCCAAATCAAGACCGAGAAGNTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTNTTNTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGCGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAAAAAAAAAA] [-] EMBL AA752126 [GGTTAANANNGGGGNAGGGAATAATCAGTGAGNGGNGGNANAAAAGGGGGAGCACCAAGCATNTCCAATNACAGCAGGGCCGNACTAAGCTTGGAGTTCAAGGGACCAAGACTAATAATTCATNTGCAGTTACGGTACTGNTTCGGCGGCATGCGCTTCCAAATCAAGACCGAGAAGNTCCCGCCACCGTCCCCGCCGGCCGCCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTNTTNTACGCCGCCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTGCGGATTTGCGTAAGCCGTAAGCTGTCAATTGAGCAAAGATCAGTCAATCATTCTACCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6683#0 -CCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGA 59 consensus_6683#1 CCCCCGCCACGCCGGCCACCTCACCACTCTCGTTTCGTTTCAGGCGGCGAGAGCGGGAGA 60 consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 GCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTT--GAGGGGGAGGAGGTGAGTG 117 consensus_6683#1 GCAAGCGAATTCTCTCAGCTCGATTTGTGTTTTTTTTTTTTGAGGGGGAGGAGGTGAGTG 120 consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 CAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGT 177 consensus_6683#1 CAACGGCGATGGTGATGACGAGGAGGAGGGCGGCGCTGCTGGTGGTGGCGATGTGCGCGT 180 consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 GCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACA 237 consensus_6683#1 GCGCGGCGCTGCCGTCGACCACGACGGCGAACAAGTTCTCCATCAACTGGAAGCCCAACA 240 consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 CCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTA 297 consensus_6683#1 CCAACTACTCCGACTGGCCCGCCCAGCACGGCCCCTTCTACAAGGGCGACTGGCTCG--- 297 consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 CTCTCCCCTCTCCCCCTCCTCCTCCTCCTGCTTCACCCGCCTCTCGTGTGCCCAGATCTG 357 consensus_6683#1 ------------------------------------------------------------ consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 GCAGATGAAACGCTTGATTTCTCATTTGGTTTGATTTTGATTCTTCTCATCTCTGATTTG 417 consensus_6683#1 ------------------------------------------------------------ consensus_6683#2 ------------------------------------------------------------ consensus_6683#0 GGATGTGGGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGG 477 consensus_6683#1 ------------TGTTCTACTACACGGCGGGGCAGGCGGACGTGATCCAGGTGGACGCGG 345 consensus_6683#2 ------------------------GGTTAANANNGGGGNAGGGAAT---AATCAGTGAGN 33 * ** * * * ** * * * consensus_6683#0 CGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCT 537 consensus_6683#1 CGGGGTACAATACGTGCGACGCCACCAACGCCATCTCCAACTACAGCAAGGGCCGCACCT 405 consensus_6683#2 GGNGGNANAAAAGGGGGAGCACCA-----AGCATNTCCAATNACAGCA-GGGCCGNACTA 87 * ** * ** * * * * *** *** ***** ****** ****** ** consensus_6683#0 ACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCT 597 consensus_6683#1 ACGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAGCTACGGCTACTGCT 465 consensus_6683#2 AG--CTTGGAGTTCAA-GGGACCAAGAC-TAATAATTCATNTGCAGTTACGG-TACTGNT 142 * *** *** **** * ********* ** ** ***** ***** ***** ***** * consensus_6683#0 TCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCG 657 consensus_6683#1 TCGGCGGCATGCGCCTCCAAATCAAGACCGAGAAGCTCCCGCCACCGTCCCCGCCGGCCG 525 consensus_6683#2 TCGGCGGCATGCGCTTCCAAATCAAGACCGAGAAGNTCCCGCCACCGTCCCCGCCGGCCG 202 ************** ******************** ************************ consensus_6683#0 CCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCG 717 consensus_6683#1 CCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTCTTCTACGCCG 585 consensus_6683#2 CCGCCAAGGACAAGTCCGCCGCCGCATTCACCGCCTCGCGCGCCTCGCTNTTNTACGCCG 262 ************************************************* ** ******* consensus_6683#0 CCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGT 777 consensus_6683#1 CCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGT 645 consensus_6683#2 CCGCCGCCGCCGTGCTCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGT 322 ************************************************************ consensus_6683#0 TGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAAC 837 consensus_6683#1 TGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAAC 705 consensus_6683#2 TGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCCCTGATTTTTTTAGTGTGTTTGGAAC 382 ************************************************************ consensus_6683#0 CCTGGAAATTTTAGTAGAACCTCGATTATTAGTGTGGATTTGCGTAAGCCGTAAGCTGTC 897 consensus_6683#1 CCTGGAAATTTTAGTAGAACCTCGATTATTAGTGT------------------------- 740 consensus_6683#2 CCTGGAAATTTTAGTAGAACCTCGATTATTAGTGCGGATTTGCGTAAGCCGTAAGCTGTC 442 ********************************** consensus_6683#0 AATTGAGCAAAGATCAGTCAATCATTCTACCAAGGTGAAGAAATTCAGAGCTACTCTGCA 957 consensus_6683#1 ------------------------------------------------------------ consensus_6683#2 AATTGAGCAAAGATCAGTCAATCATTCTACCAAAAAAAAAAA------------------ 484 consensus_6683#0 GGTCCAGAGACGGAGTAGTTTTGACTCTGCATCTTGAATCTAGATAACAGCA 1009 consensus_6683#1 ---------------------------------------------------- consensus_6683#2 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||