These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1567 fasta sequence [CAAACTCTTCTCTCTCGTCTCGTCGCGGAGGAGGCCATGAGCTTGGCTTATCCGCTCCTCCGCCTCCCATGCCGCTGCTCGCTGGCGGCGGCGGCGGTGCCGGCGCCGCCGAGGGCGTCGCCTGGGCCTACTATATCGGTGTCTATGTCCGTGGATGGGGGTGAGGGGGAGCTGACGGGGAGGGAGAGGCGGAAGCAGCGGGGGGAGAGGCGGGGGCTGCGGGCGCGGGACTGGAAGGAGGAGGTGCAGGAGCGGCTCATCCACGAGCCGGCGCGGCGGCGGAAGAAGCCACCCAAGAGGACGTGGAGGGAGAACCTCAACCTCGACTTCCTCGCCGAGCACGGCCCGCAGTGGTGGCTCGTGCGCGTCTCCATGGCGCCCGGCACCGACTACGTCGACCTCCTCACCAAGGCGATCTCACGACGGTACCCGGAGCTCTCGTTCAAGATTTATAATCCATCCATCCAAGTCAAGAAGAGACTGAAAAATGGTTCAATCAGTACCAAATCAAAGCCTTTGCATCCCGGGTTGGTCTTTCTGTATTGCACCTTGAACAAGGAAGTTCATGACTTCATTAGGGACACTGAAGGTTGTTATGGTTTTATTGGAGCTACAGTTGGCTCTATCAAAAGGCAGATTAAAAAGCCTAAACCTATTCCAGTTGAAGAAGTTGAATCGATTATTAGGGAAGAAAAGGAGGAGCAAGAGAGAGTTGACAGAGAGTTTGAAGAAATGGAAAATGGAGGAATTGTCGAGTCTTTCAACAAACCCGTTGAAGATTCTGAACTCATGCTAATGAATAAGATCAAGAGACAGTTTAAGAAACCAATCTCAAAAGGTGGCAGCAACCACAATGCTTTTACGCCTGGTGCTAGTGTTCATGTTCTATCTGGGCCTTTTGAAGGCTTCACTGGTTCACTCCTGGAAGTGAATCGCAAAAATAAGAAGGCCACTCTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATGGTG-AAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTCTTATGAGCATTTAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTCTTTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGAAAGACCCAATTCATCTTTTATTAAATTGTTTAGGCAAAAGCTTTTGAGAACAAAGGGATCTGCTTCTTCCCCTTTTCTTTTAAAAAAAAAAAAAAAA] [+] EMBL AK058472 [CAAACTCTTCTCTCTCGTCTCGTCGCGGAGGAGGCCATGAGCTTGGCTTATCCGCTCCTCCGCCTCCCATGCCGCTGCTCGCTGGCGGCGGCGGCGGTGCCGGCGCCGCCGAGGGCGTCGCCTGGGCCTACTATATCGGTGTCTATGTCCGTGGATGGGGGTGAGGGGGAGCTGACGGGGAGGGAGAGGCGGAAGCAGCGGGGGGAGAGGCGGGGGCTGCGGGCGCGGGACTGGAAGGAGGAGGTGCAGGAGCGGCTCATCCACGAGCCGGCGCGGCGGCGGAAGAAGCCACCCAAGAGGACGTGGAGGGAGAACCTCAACCTCGACTTCCTCGCCGAGCACGGCCCGCAGTGGTGGCTCGTGCGCGTCTCCATGGCGCCCGGCACCGACTACGTCGACCTCCTCACCAAGGCGATCTCACGACGGTACCCGGAGCTCTCGTTCAAGATTTATAATCCATCCATCCAAGTCAAGAAGAGACTGAAAAATGGTTCAATCAGTACCAAATCAAAGCCTTTGCATCCCGGGTTGGTCTTTCTGTATTGCACCTTGAACAAGGAAGTTCATGACTTCATTAGGGACACTGAAGGTTGTTATGGTTTTATTGGAGCTACAGTTGGCTCTATCAAAAGGCAGATTAAAAAGCCTAAACCTATTCCAGTTGAAGAAGTTGAATCGATTATTAGGGAAGAAAAGGAGGAGCAAGAGAGAGTTGACAGAGAGTTTGAAGAAATGGAAAATGGAGGAATTGTCGAGTCTTTCAACAAACCCGTTGAAGATTCTGAACTCATGCTAATGAATAAGATCAAGAGACAGTTTAAGAAACCAATCTCAAAAGGTGGCAGCAACCACAATGCTTTTACGCCTGGTGCTAGTGTTCATGTTCTATCTGGGCCTTTTGAAGGCTTCACTGGTTCACTCCTGGAAGTGAATCGCAAAAATAAGAAGGCCACTCTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATGGTG AAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTCTT ] [-] EMBL CA759248 [ ATGTTCCATC GGGCCCTTTGAAGGCTTCCCTGGTTCCCTCCTGGAAGGGAATCGCAAAAATAAGAAGCCCCCTTTTCAGTTGCCACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAGGCAGTTGATACTTGATGGTGAAAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCCTTTAACTCTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCCCATGAGGGCTAGATTTGTCGGACAAGGAAGGTCATGTAGAAAACAAGGTTCGAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTATCAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTTTTATGAGCATTTAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTCTTTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGAAAGACCCAATTCATCTTTTATTAAATTGTTTAGGCAAAAGCTTTTGAGAACAAAGGGATCTGCTTCTTCCCCTTTTCTTTTAAAAAAAAAAAAAAAA] [+] EMBL AA752319 [ TCAAATTGAGGCAGTTGATACTTGATGGTG AAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATACACCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTGTCGGACAAGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGTTGGTATTTTTAGATGCATAGGCTATTC ] consensusID : consensus_6686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence [CTCCTGAGTAATGAGCATGCCTAAGCGTCTGCCATTCTGGTTGCATCAGGTGGTCAGGAAAGCAATAACTTAGGAAGTACTAGTAGTACTTCTATAGCAAGCAGGAAGTTAGCATACAAGTTAGATTTTCATATGTTTCATGTACGAATGGGCTGAGAAAGAAATGATTTACATGCACGGTATGTGATTTTATCATTTCTGTGACAGACTCCAGAGTCCCCAGGTTATAGGATAGAACTTATGTTCTATTATTGTGCTGCAATTATTCATGCAACCCAATCTAAGTAAATCAAGTTTAGTTACGATACTAACAATACATAAATTTACTGCTCTAGAAAATGTTAGGACATCTCCAATTTCCATCATATAGGACATTGCTTCTTGGCATAATATTTTGCCTTTTTTCTTAACAGCCATTCAAAAAGAATATTTTGATAACTGTTTAGCTCCCCCACACTATAGCCGCAGGAGAGGTTGTTTCTGATTTTATGGGTTTATATCCTCCTTCCATAAGTTTGTGTTTCTTGTCTGAGCAGAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTTGTCGGACAAGGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGNTGGTATTTTTAGATGCA] [+] EMBL CA766278 [CTCCTGAGTAATGAGCATGCCTAAGCGTCTGCCATTCTGGTTGCATCAGGTGGTCAGGAAAGCAATAACTTAGGAAGTACTAGTAGTACTTCTATAGCAAGCAGGAAGTTAGCATACAAGTTAGATTTTCATATGTTTCATGTACGAATGGGCTGAGAAAGAAATGATTTACATGCACGGTATGTGATTTTATCATTTCTGTGACAGACTCCAGAGTCCCCAGGTTATAGGATAGAACTTATGTTCTATTATTGTGCTGCAATTATTCATGCAACCCAATCTAAGTAAATCAAGTTTAGTTACGATACTAACAATACATAAATTTACTGCTCTAGAAAATGTTAGGACATCTCCAATTTCCATCATATAGGACATTGCTTCTTGGCATAATATTTTGCCTTTTTTCTTAACAGCCATTCAAAAAGAATATTTTGATAACTGTTTAGCTCCCCCACACTATAGCCGCAGGAGAGGTTGTTTCTGATTTTATGGGTTTATATCCTCCTTCCATAAGTTTGTGTTTCTTGTCTGAGCAGAAGTCTTGCGGATCATTAGCTTTGATCAATACAGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTGACAAAACTGTTAGCATACGGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGAGGGCTAGATTTTGTCGGACAAGGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGGNTGGTATTTTTAGATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6686#0 CAAACTCTTCTCTCTCGTCTCGTCGCGGAGGAGGCCATGAGCTTGGCTTATCCGCTCCTC 60 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 CGCCTCCCATGCCGCTGCTCGCTGGCGGCGGCGGCGGTGCCGGCGCCGCCGAGGGCGTCG 120 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 CCTGGGCCTACTATATCGGTGTCTATGTCCGTGGATGGGGGTGAGGGGGAGCTGACGGGG 180 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 AGGGAGAGGCGGAAGCAGCGGGGGGAGAGGCGGGGGCTGCGGGCGCGGGACTGGAAGGAG 240 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 GAGGTGCAGGAGCGGCTCATCCACGAGCCGGCGCGGCGGCGGAAGAAGCCACCCAAGAGG 300 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 ACGTGGAGGGAGAACCTCAACCTCGACTTCCTCGCCGAGCACGGCCCGCAGTGGTGGCTC 360 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 GTGCGCGTCTCCATGGCGCCCGGCACCGACTACGTCGACCTCCTCACCAAGGCGATCTCA 420 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 CGACGGTACCCGGAGCTCTCGTTCAAGATTTATAATCCATCCATCCAAGTCAAGAAGAGA 480 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 CTGAAAAATGGTTCAATCAGTACCAAATCAAAGCCTTTGCATCCCGGGTTGGTCTTTCTG 540 consensus_6686#1 --------CTCCTGAGTAATGAGCATGCCTAAGCGTCTGCCATTCTGGTTGCATCAGGTG 52 * * * * * ** * **** * *** * ***** ** consensus_6686#0 TATTGCA---CCTTGAACAAGGAAGTTCATGACTTCATTAGGGACACTGAAGGTTGTTAT 597 consensus_6686#1 GTCAGGAAAGCAATAACTTAGGAAGTACTAGTAGTACTTCTATAGCAAGCAGGAAGTTAG 112 * * * * * ******* * * * ** * * *** **** consensus_6686#0 GGTTTTATTGGAGCTACAGTTGGCTCTATCAAAAGGCAGATTAAAAAGCCTAAACCTATT 657 consensus_6686#1 CATACAAGTTAGATTTTCATATGTTTCATGTACGAATGGGCTGAGAAA--GAAATGATTT 170 * * * * * * * ** * * * * ** *** ** consensus_6686#0 CCAGTTGAAGAAGTTGAATCGATTATTAGGGAAGAAAAGGAGGAGCAAGAGAGAGTTGAC 717 consensus_6686#1 ACATGCACGGTATGTGATTTTATCATTTCTGTGACAGACT-----CCAGAGTCCCCAGGT 225 ** * * *** * ** *** * * * * **** * consensus_6686#0 AGAGAGTTTGAAGAAATGGAAAATGGAGGAATTGTCGAGTCTTTCAACAAACCCGTTGAA 777 consensus_6686#1 TATAGGATAGAACTTATGTTCTATTATTGTGCTGC--AATTATTCATGCAACCCAATCTA 283 * * *** *** ** * ** * * **** ***** * * consensus_6686#0 GATTCTGAACTCATGCTAATGAATAAGATCAAGAGACAGTTTAAGAAACCAATCTCAAAA 837 consensus_6686#1 AGT----AAATCAAGTTTAGTTACGATACTAACA-ATACATAAATTTACTGCTCTAGAAA 338 * ** *** * * * * * * ** * * * * ** ** *** *** consensus_6686#0 G-GTGGCAGCAACCACAATGCTT-TTACGCCTGGTGCTAGTGTTCA-TGTTCTATCTGGG 894 consensus_6686#1 ATGTTAGGACATCTCCAATTTCCATCATATAGGACATTGCTTCTTGGCATAATATTTTGC 398 ** ** * **** * * * * * * * *** * * consensus_6686#0 CCTTTTGAAGGCTTCACTGGTTCACTCCTGGAAGTGAATCGCAAAAATAAGAAGGCCACT 954 consensus_6686#1 CTTTTTT----CTTAACAG---CCATTCAAAAAGAATATTTTGATAACTGTTTAGCTCCC 451 * **** *** ** * * * * *** ** * ** ** * consensus_6686#0 CTTCAGTTGACACTTTTTGGGAAGGAGAGCTTTGTGGATCTAGATTTTGATCAAATTGAG 1014 consensus_6686#1 CCACACT--ATAGCCGCAGGAGAGGTTGTTTCTGATTTTATGGGTTTATATCCTCCTTCC 509 * ** * * * ** *** * ** * * * *** *** * consensus_6686#0 GCA-GTTGATACTTGATGGTGAAAAAAAAAGTCTTGCGGATCATTAGCTTTGATCAATAC 1073 consensus_6686#1 ATAAGTTTGTGTTTCTTG-TCTGAGCAGAAGTCTTGCGGATCATTAGCTTTGATCAATAC 568 * *** * ** ** * * * ******************************** consensus_6686#0 AGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTG 1133 consensus_6686#1 AGCTGGGGCCTGGAGGAAATAGCTAAGATTGAATCCATTTAACTTTGAGTAACTACCGTG 628 ************************************************************ consensus_6686#0 ACAAAACTGTTAGCATACGGG-CTACCTCAAGAACTGACCTGAGTTACATGACCACATGA 1192 consensus_6686#1 ACAAAACTGTTAGCATACGGGGCTACCTCAAGAACTGACCTGAGTTACATGACCACATGA 688 ********************* ************************************** consensus_6686#0 GGGCTAGATTT-GTCGGACAAGG-AAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGG 1250 consensus_6686#1 GGGCTAGATTTTGTCGGACAAGGGAAAGTCATGTAGAAAACAAGGTTCAAACTTTTTAGG 748 *********** *********** ************************************ consensus_6686#0 TTGGTATTTTTAGATGCATAGGCTATTCATTTCAAAATTTTGGTTCGTACCTACATTTAT 1310 consensus_6686#1 NTGGTATTTTTAGATGCA------------------------------------------ 766 ***************** consensus_6686#0 CAATAAATTCAATAAAAGAAGAACAATTCTTTGCACAAGGGTTTTGTTCTTATGAGCATT 1370 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 TAGATCCCCAGTGTCACTTCACCATGTGTATTAGGCTATCTTCGTGTTCCACTTTGCTTC 1430 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 TTTCTTTGTTGATTCCTTAGCTACGAGATCCCTTTGGAGAAAGACCCAATTCATCTTTTA 1490 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 TTAAATTGTTTAGGCAAAAGCTTTTGAGAACAAAGGGATCTGCTTCTTCCCCTTTTCTTT 1550 consensus_6686#1 ------------------------------------------------------------ consensus_6686#0 TAAAAAAAAAAAAAAAA 1567 consensus_6686#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||