These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1562 fasta sequence [GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAGAAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGG-AACATTTTTGATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTCTAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCA-GGATGACAGCGTTT-CAGGATCAGTANGTGACATGTTTGAACCTTC-CCAACTGAAAGA-CCGAACAGGAAACTACGCTGGTGTCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAACCTGGTGAGCGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACCTGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATCTCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGGAAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCATTCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCGCATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAGCCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAATTGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTGGCAGAAGGCCTGAGGGCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATATATCTGACAACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAAGTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCAAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTGGTGCAAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTATATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCCTGACTGCT] [+] EMBL AA752718 [GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAGAAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGG AACATTTTTGATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTCTAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCA GGATGACAGCGTTT CAGGATCAGTANGTGACATGTTTGAACCTTC CCAACTGAAAGA CCGAACAGGAAACTACGCTGGTGTCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAA ] [+] EMBL AA754159 [ TCGTGCCGAATTCGGCACGAGAAAACCAGCACAAAGCACATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCACAACGTGGAATTACTCTGTTGCCACATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGGAAACATTTTTGATAACACATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTACTACAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGCCGA TCTA AAAATATGCCT GACCC AATCTCCTGAA ATTACCACCAATCACCCCGTTTCCAGGATtcact ] [+] EMBL AK059066 [ CACAAGGCAGATCAAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAGAAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTAACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAGAGACACTGGG AACATTTTTGATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTCCAAAATCTCTAGTAGAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTCTAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCA GGATGACAGCGTTT CAGGATCAGTAGGTGACATGTTTGAACCTTCACCAACTGAAAGAGCCGAACAGGAAACTACGCTGGTGTCTCCTGCAGAAATGTTGGTATTTAAATT CGGGCAGCATAATAACCCTAACCTGGTGAGCGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACCTGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATCTCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGGAAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCATTCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCGCATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAGCCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAATTGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTGGCAGAAGGCCTGAGGGCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATATATCTGACAACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAAGTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCAAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTGGTGCAAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTATATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCCTGACTGCT] consensusID : consensus_6689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCTTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCCTGCAGCCGATTGCGCAGAAGGCCTGAGGCGCCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATGATATCTGACACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAAGTGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGCTGTGTGGTCAACAAAAAAAAAA] [+] EMBL BI806612 [GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCTTGAAGCCGAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCCTGCAGCCGATTGCGCAGAAGGCCTGAGGCGCCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCATTTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATGATATCTGACACAGATAGGAAATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAAGTGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCATCCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGTGTTGGGTTTTTCTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGCTGTGTGGTCAACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6689#0 GCACGATTCGGCACGAGCTCGTGCCGAATTCGGCACGAGAAAACGAGCACAAGGCAGATC 60 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 AAGTGACGCCATGCATTCCAACATTTGACTTGAGTGGAGCTGCATCAACTAAGGGATCAG 120 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 AAGGTGGAATTACTCTGTTGCCAGATGCAAAATTGTCAGTGTTTACAGCCGTGCAGCTTA 180 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 ACTCTAAGCTGGATGGAGAGCACAACCTTAGCGGTGGTAAAGACACTGGGAACATTTTTG 240 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 ATAACAGATCTGTGGATGACAGTTACCATGAGCAGGAGCTTCTCAATGACCTTTCTGCTC 300 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 CAAAATCTCTAGTAAAACCTTGCAGTGCCTGTATGGATTCATGCAATGGGCAGGCGATTC 360 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TAGAAGATATGCCTGGACCCAAATCTCCTGAAGATTACCAGGATGACAGCGTTTCAGGAT 420 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 CAGTANGTGACATGTTTGAACCTTCCCAACTGAAAGACCGAACAGGAAACTACGCTGGTG 480 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TCTCCTGCAGAAATGTTGGTATTTAAATTCCGGGCAGCATAATAACCCTAACCTGGTGAG 540 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 CGTTGGAGGACACAACGATAGCTGTGATGAAGACACTGCTGACATGTTTAGTACTGAACC 600 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TGTGGCGAGTAATAATCAACATGAGCAGGAGCTTCCAAATGACGTATCTGCTCCCGTATC 660 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TCTCAAGGAATCTGCAATTTGTCAGGAAGACATCAGTGTTCATACCGAATCTTGCCCTGG 720 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 AAAGTCGCTTCCAGTTCCAGAAGATATATCTGCACCTAAATCTCCTGAAGAGCGTGCCAT 780 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TCATCAGGATGACAGCGTTCCAAGATCAGCAGTTTTGTGCCAAACTAGCGGGCGAAGGCG 840 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 CATAGATGAAATCAGCACCAAGCTTCTGAGCTTCAAAATTTCCAGCACTGTTAAACCAAG 900 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 CCACATTGCTATGAACGCCCCTAGCACGAAGCAAGTCGACAACCTGAGTGAATCTGCAAT 960 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TGCCCTTCTCAGGAACAGGGAGAACACGCTTGCCATCAAAACAGACCGGCCTGTGAAGCC 1020 consensus_6689#1 ------------GAACAGGGAGAACACGCTTGCCATCANAACAGACCGGCCT-TGAAGCC 47 ************************** ************* ******* consensus_6689#0 GAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACCGCTGCAGCCGATTG-GCA 1079 consensus_6689#1 GAACCCTGATCGCTCTGTCGCGAAGAACTCATCAAGGCGACC-CTGCAGCCGATTGCGCA 106 ****************************************** ************* *** consensus_6689#0 GAAGGCCTGAGG-GCCACTGAGGCAGCAACCGATGGTACATTGCTGTTCTTGGTAAGCAT 1138 consensus_6689#1 GAAGGCCTGAGGCGCCACTGAGCATGCAACCGATGGTACATTGCTGTTCTTGGTAAGCAT 166 ************ ********* *********************************** consensus_6689#0 TTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATAT-ATATCTGACAACAGATAGGAA 1197 consensus_6689#1 TTAGGTTCAACGTCGAGTTGAAGAATAGGAGCATATATGATATCTGACA-CAGATAGGAA 225 ************************************** ********** ********** consensus_6689#0 ATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTGCTGTGCAGTGACGAA 1257 consensus_6689#1 ATGTAACACGATATGGTGTTTGTTTCCACTGTGTGTGCTACTCTCTGTCCCAGTGACGAA 285 ******************************************** ********** consensus_6689#0 GTGGCCGTGTGTGTTTTGGCTGTTTTATTGTTCCA-AGAAGGAACTGACTCAGAAATCAT 1316 consensus_6689#1 GTG-CCGTGTGTGTTTTGGCTGTTTTATTGTTCCACAGAAGGAACTGACTCAGAAATCAT 344 *** ******************************* ************************ consensus_6689#0 CCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTGGTGTTGGGTTTTT 1376 consensus_6689#1 CCGCATGATGATCTTTTTCCTTCTTTCTAGACTCAATCATTGACGTG-TGTTGGGTTTTT 403 *********************************************** ************ consensus_6689#0 CTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTGGCTGTGTG 1436 consensus_6689#1 CTTATGTACTCTAATTCAAGTATTTCGAACAGAATGGTATTTATGGATTGTG-CTGTGTG 462 **************************************************** ******* consensus_6689#0 GT--GCAAGCATTCCTTTGTTTGTTACTCTGAGAGTAACCATGTCTATGTCGCACTCTAT 1494 consensus_6689#1 GTCAACAAAAAAAAAA-------------------------------------------- 478 ** *** * consensus_6689#0 ATCTTGGTGCACCTTTCAGGTTGCAAGAATAATGTACGCTATCTCGAGTTACCTGACTCC 1554 consensus_6689#1 ------------------------------------------------------------ consensus_6689#0 TGACTGCT 1562 consensus_6689#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||