These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2269 fasta sequence [TCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGTCGCCGCCGCCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTGAGAGAGGGGTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGAGCACACCGTGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTCTGCTCCCCTTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCCACCTGCTCCTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGGGAGGACTTGATTCTTGCTTGTTGTTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGTGGTGTGTGTGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAGCAGCAGCAGCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCATCTCTACTCCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTATCCAGTACATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATAACTGAATTTGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCAATCTTCTACCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGAAGGTGGCTGACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGATGCAGAAATAATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCCTATGGGCGAGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAATCTAACAGATGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGGTGGGATTGGTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATGTACTCCACCGATGTTGTTATATCCAATTTAACCTTCAAGAACTCACCGTTTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAATTCACCGAACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATTTCCTTTGCTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTG-TTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAAT-GTTGGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTAGCGGC] [+] EMBL AK066209 [TCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGTCGCCGCCGCCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTGAGAGAGGGGTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGAGCACACCGTGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTCTGCTCCCCTTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCCACCTGCTCCTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGGGAGGACTTGATTCTTGCTTGTTGTTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGTGGTGTGTGTGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAGCAGCAGCAGCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCATCTCTACTCCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTATCCAGTACATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATAACTGAATTTGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCAATCTTCTACCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGAAGGTGGCTGACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGATGCAGAAATAATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCCTATGGGCGAGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAATCTAACAGATGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGGTGGGATTGGTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATGTACTCCACCGATGTTGTTATATCCAATTTAACCTTCAAGAACTCACCGTTTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAATTCACCGAACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATTTCCTTTGCTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTG TTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAAT GTTGGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTC ] [+] EMBL CA766931 [ gacGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTGNTTTTTTTTTTATTAGCATGATGGTTGCTTCTTGNATATAGTTGGGGGAGATGAATGGTTGGTGTACCATGCATGGTTTTG ] [-] EMBL AU225938 [ ccgctGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTTTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCGATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTG TTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAAT GTTGGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTAGCGGC] consensusID : consensus_6690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence [CAGGANTCGGCACGAGTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTNACAATCCTAGCGCCCCNGAATTCNCGAACACTGATGGNATTGATCCANATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATG] [+] EMBL AA752749 [CAGGANTCGGCACGAGTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTNACAATCCTAGCGCCCCNGAATTCNCGAACACTGATGGNATTGATCCANATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6690#0 TCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGTCGCCGCCG 60 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTGAGAGAGGG 120 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGAGCACACCG 180 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTCTGCTCCCC 240 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCCACCTGCTC 300 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGGGAGGACTT 360 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GATTCTTGCTTGTTGTTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGTGGTGTGTG 420 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAGCAGCAGCA 480 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCATCTCTACT 540 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTATCCAGTAC 600 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 ATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATAACTGAATT 660 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCAATCTTCTA 720 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGAAGGTGGCT 780 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGATGCAGAAAT 840 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 AATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCCTATGGGCG 900 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 AGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAATCTAACAGA 960 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGGTGGGATTG 1020 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATGTACTCCAC 1080 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CGATGTTGTTATATCCAATTTAACCTTCAAGAACTCAC-CGTTTTGGAATATCCATCCTG 1139 consensus_6690#1 ---------------------------CAGGANTCGGCACGAGTTGGAATATCCATCCTG 33 ** ** * ** ***************** consensus_6690#0 TATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAATTCACCGA 1199 consensus_6690#1 TATACTGCAGCCAAGTGCTTGTCCAGCATGTNACAATCCTAGCGCCCCNGAATTCNC-GA 92 ******************************* **************** ****** * ** consensus_6690#0 ACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCA 1259 consensus_6690#1 ACACTGATGGNATTGATCCANATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCA 152 ********** ********* *************************************** consensus_6690#0 GAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATTTCCTTTG 1319 consensus_6690#1 GAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATG------------------ 194 ****************************************** consensus_6690#0 CTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGTGGTGCAG 1379 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCC 1439 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATG 1499 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCA 1559 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAA 1619 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAG 1679 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGT 1739 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGT 1799 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTT 1859 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAA 1919 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 ATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCT 1979 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTGTTTTT 2039 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAATGTTGGTGTAC 2099 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTG 2159 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAA 2219 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 ATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTAGCGGC 2269 consensus_6690#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||