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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1572 fasta sequence
[GACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGGTGAGCTCAATCCTTCCCTGCACCTCTCCCCTTTTGTTCTCGTGCCTGCGATTCGTCGAACACTTCGTAGACAGGAAGCGTAGTTGAATCGACCGGTAGGTTTTTCCTCGGCAGCGGGACATGGAGAGGAGGTGTGGGGATGGGTTAGGGTAGCGGGTAAGATTGTGCTGCCTGCAGCAGAAGCTAGCGCGATGGGAAGAATCATGAGGAATCGGCAATTGAGTACCAAAAATGAGGAAATTAGGCCATGGTTGGTAGAAATTGTTTCGGCATTACATTTACGGAATTGTTTTTTTCTGACCAAGTCGCCGGAGGGGGGCGTTCCCCACCTGAATATATTTCAAACCATCTTACAGAATGTTAAGGTCGTCATGTGTATCAGAACTTTGTAGCAATTGATTCCACTTCTTTTTTATTGAATACCTGAAGCTTAGCACCATGCAAATATGCAATCCACTGAACACTTTATAAGCAAAATTTACTTGCCATTCACTTCATGACTTAGATCTTGTTCCAACGTTTTTACAGCCAGCAATGCTTACTGTGTGTTTGCTCTAGCCTGTAGTGATTTCTTAACTCCAAACATACCAAGGTTGGCCTTGCAGATTTATGTGTTTTTTGATGTAGCGGTCGGGTTATCCATTATCTGAAAAAAATTGTGATAGTACATGAGATTTATCATAGATTCATTGCGAGGGAAACATGGCAGGGGAAAAGGGGAATGGGGTTGAGAAAGGGCATGCTATTTTCCTTTCTGTGCCAACTGATACCCTCTCTGTTTGTCACTGAGTTAGGAGTCCTTCAACTTGCCAGACAGATGGAACAAGACCATCTCAGACCATATTGTACATTAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGATATCTTCACTGCAAGTATGATGCAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG]
[+] EMBL AK102463 [GACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGGTGAGCTCAATCCTTCCCTGCACCTCTCCCCTTTTGTTCTCGTGCCTGCGATTCGTCGAACACTTCGTAGACAGGAAGCGTAGTTGAATCGACCGGTAGGTTTTTCCTCGGCAGCGGGACATGGAGAGGAGGTGTGGGGATGGGTTAGGGTAGCGGGTAAGATTGTGCTGCCTGCAGCAGAAGCTAGCGCGATGGGAAGAATCATGAGGAATCGGCAATTGAGTACCAAAAATGAGGAAATTAGGCCATGGTTGGTAGAAATTGTTTCGGCATTACATTTACGGAATTGTTTTTTTCTGACCAAGTCGCCGGAGGGGGGCGTTCCCCACCTGAATATATTTCAAACCATCTTACAGAATGTTAAGGTCGTCATGTGTATCAGAACTTTGTAGCAATTGATTCCACTTCTTTTTTATTGAATACCTGAAGCTTAGCACCATGCAAATATGCAATCCACTGAACACTTTATAAGCAAAATTTACTTGCCATTCACTTCATGACTTAGATCTTGTTCCAACGTTTTTACAGCCAGCAATGCTTACTGTGTGTTTGCTCTAGCCTGTAGTGATTTCTTAACTCCAAACATACCAAGGTTGGCCTTGCAGATTTATGTGTTTTTTGATGTAGCGGTCGGGTTATCCATTATCTGAAAAAAATTGTGATAGTACATGAGATTTATCATAGATTCATTGCGAGGGAAACATGGCAGGGGAAAAGGGGAATGGGGTTGAGAAAGGGCATGCTATTTTCCTTTCTGTGCCAACTGATACCCTCTCTGTTTGTCACTGAGTTAGGAGTCCTTCAACTTGCCAGACAGATGGAACAAGACCATCTCAGACCATATTGTACATTAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGATATCTTCACTGCAAGTATGATGCAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG]
consensusID : consensus_6695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence
[AGTATCCGCCCGACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAGCTATTTCTGCNAAAAAAAAAAAAAAA]
[+] EMBL AK068571 [AGTATCCGCCCGACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG ]
[+] EMBL CA757952 [ AACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGCGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGACAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCANTGACGGTCATCAACTCTTTGATATANACTGTCGGGCATTGTCCCGAGCTATTTCTGCNAAAAAAAAAAAAAAA]
consensusID : consensus_6695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[TACTCGTGCCNAATTCNGCACNACGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTANACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTNGACAAATCATAATTACTTCATGATATACAGTTCAAAGANTTGAACACTACTAGTTTANTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG]
[+] EMBL AA752995 [TACTCGTGCCNAATTCNGCACNACGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTANACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTNGACAAATCATAATTACTTCATGATATACAGTTCAAAGANTTGAACACTACTAGTTTANTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 GACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAAC 60
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 GGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCC 120
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 CCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGGTGAGCTCAATC 180
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 CTTCCCTGCACCTCTCCCCTTTTGTTCTCGTGCCTGCGATTCGTCGAACACTTCGTAGAC 240
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 AGGAAGCGTAGTTGAATCGACCGGTAGGTTTTTCCTCGGCAGCGGGACATGGAGAGGAGG 300
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 TGTGGGGATGGGTTAGGGTAGCGGGTAAGATTGTGCTGCCTGCAGCAGAAGCTAGCGCGA 360
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 TGGGAAGAATCATGAGGAATCGGCAATTGAGTACCAAAAATGAGGAAATTAGGCCATGGT 420
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 TGGTAGAAATTGTTTCGGCATTACATTTACGGAATTGTTTTTTTCTGACCAAGTCGCCGG 480
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 AGGGGGGCGTTCCCCACCTGAATATATTTCAAACCATCTTACAGAATGTTAAGGTCGTCA 540
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 TGTGTATCAGAACTTTGTAGCAATTGATTCCACTTCTTTTTTATTGAATACCTGAAGCTT 600
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 AGCACCATGCAAATATGCAATCCACTGAACACTTTATAAGCAAAATTTACTTGCCATTCA 660
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 CTTCATGACTTAGATCTTGTTCCAACGTTTTTACAGCCAGCAATGCTTACTGTGTGTTTG 720
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 CTCTAGCCTGTAGTGATTTCTTAACTCCAAACATACCAAGGTTGGCCTTGCAGATTTATG 780
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 TGTTTTTTGATGTAGCGGTCGGGTTATCCATTATCTGAAAAAAATTGTGATAGTACATGA 840
consensus_6695#1 ------------------------------------------------------------
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 GATTTATCATAGATTCATTGCGAGGGAAACATGGCAGGGGAAAAGGGGAATGGGGTTGAG 900
consensus_6695#1 AGTATCCGCCCGACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGG 60
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 AAAGGGCATGCTATTTTCCTTTCTGTGCCAACTGATACCCTCTCTGTTTGTCACTGAGTT 960
consensus_6695#1 CCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGAT 120
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 AGGAGTCCTTCAACTTGCCAG-ACAGATGGAACAAGACCATCTCAGACCATATTGTACAT 1019
consensus_6695#1 T--------TCACGAGGCCCCTCCTAGCGTGCTCATAT--------CGAGACCTTCATGG 164
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 TAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGATATCTTCACTG 1079
consensus_6695#1 ATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGC 224
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 CAAGTATGATGC-AGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGC 1138
consensus_6695#1 ACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACC 284
consensus_6695#2 ------------------------------------------------------------
consensus_6695#0 ACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACC 1198
consensus_6695#1 AATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGT 344
consensus_6695#2 ------------------------------------------TACTCGTGCCNAAT---T 15
consensus_6695#0 AATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGT 1258
* * ***** ** *
consensus_6695#1 GGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCC 404
consensus_6695#2 CNGCACNACGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACC- 74
consensus_6695#0 GGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCC 1318
***************************************************
consensus_6695#1 ATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATG 464
consensus_6695#2 ATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTANACAGTGTTGTATG 134
consensus_6695#0 ATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATG 1378
********************************************** *************
consensus_6695#1 GTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAA 524
consensus_6695#2 GTTGACAGTCCGACAGATCTGTGTNGACAAATCATAATTACTTCATGATATACAGTTCAA 194
consensus_6695#0 GTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAA 1438
************************ ** ********************************
consensus_6695#1 AGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTC 584
consensus_6695#2 AGANTTGAACACTACTAGTTTANTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTC 254
consensus_6695#0 AGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTC 1498
*** ****************** *************************************
consensus_6695#1 GTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCG 644
consensus_6695#2 GTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCG 314
consensus_6695#0 GTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCG 1558
************************************************************
consensus_6695#1 GGCATTGTCCCGAGCTATTTCTGCNAAAAAAAAAAAAAAA 684
consensus_6695#2 GGCATTGTCCCGAG-------------------------- 328
consensus_6695#0 GGCATTGTCCCGAG-------------------------- 1572
**************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||