These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1572 fasta sequence [GACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGGTGAGCTCAATCCTTCCCTGCACCTCTCCCCTTTTGTTCTCGTGCCTGCGATTCGTCGAACACTTCGTAGACAGGAAGCGTAGTTGAATCGACCGGTAGGTTTTTCCTCGGCAGCGGGACATGGAGAGGAGGTGTGGGGATGGGTTAGGGTAGCGGGTAAGATTGTGCTGCCTGCAGCAGAAGCTAGCGCGATGGGAAGAATCATGAGGAATCGGCAATTGAGTACCAAAAATGAGGAAATTAGGCCATGGTTGGTAGAAATTGTTTCGGCATTACATTTACGGAATTGTTTTTTTCTGACCAAGTCGCCGGAGGGGGGCGTTCCCCACCTGAATATATTTCAAACCATCTTACAGAATGTTAAGGTCGTCATGTGTATCAGAACTTTGTAGCAATTGATTCCACTTCTTTTTTATTGAATACCTGAAGCTTAGCACCATGCAAATATGCAATCCACTGAACACTTTATAAGCAAAATTTACTTGCCATTCACTTCATGACTTAGATCTTGTTCCAACGTTTTTACAGCCAGCAATGCTTACTGTGTGTTTGCTCTAGCCTGTAGTGATTTCTTAACTCCAAACATACCAAGGTTGGCCTTGCAGATTTATGTGTTTTTTGATGTAGCGGTCGGGTTATCCATTATCTGAAAAAAATTGTGATAGTACATGAGATTTATCATAGATTCATTGCGAGGGAAACATGGCAGGGGAAAAGGGGAATGGGGTTGAGAAAGGGCATGCTATTTTCCTTTCTGTGCCAACTGATACCCTCTCTGTTTGTCACTGAGTTAGGAGTCCTTCAACTTGCCAGACAGATGGAACAAGACCATCTCAGACCATATTGTACATTAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGATATCTTCACTGCAAGTATGATGCAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG] [+] EMBL AK102463 [GACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGGTGAGCTCAATCCTTCCCTGCACCTCTCCCCTTTTGTTCTCGTGCCTGCGATTCGTCGAACACTTCGTAGACAGGAAGCGTAGTTGAATCGACCGGTAGGTTTTTCCTCGGCAGCGGGACATGGAGAGGAGGTGTGGGGATGGGTTAGGGTAGCGGGTAAGATTGTGCTGCCTGCAGCAGAAGCTAGCGCGATGGGAAGAATCATGAGGAATCGGCAATTGAGTACCAAAAATGAGGAAATTAGGCCATGGTTGGTAGAAATTGTTTCGGCATTACATTTACGGAATTGTTTTTTTCTGACCAAGTCGCCGGAGGGGGGCGTTCCCCACCTGAATATATTTCAAACCATCTTACAGAATGTTAAGGTCGTCATGTGTATCAGAACTTTGTAGCAATTGATTCCACTTCTTTTTTATTGAATACCTGAAGCTTAGCACCATGCAAATATGCAATCCACTGAACACTTTATAAGCAAAATTTACTTGCCATTCACTTCATGACTTAGATCTTGTTCCAACGTTTTTACAGCCAGCAATGCTTACTGTGTGTTTGCTCTAGCCTGTAGTGATTTCTTAACTCCAAACATACCAAGGTTGGCCTTGCAGATTTATGTGTTTTTTGATGTAGCGGTCGGGTTATCCATTATCTGAAAAAAATTGTGATAGTACATGAGATTTATCATAGATTCATTGCGAGGGAAACATGGCAGGGGAAAAGGGGAATGGGGTTGAGAAAGGGCATGCTATTTTCCTTTCTGTGCCAACTGATACCCTCTCTGTTTGTCACTGAGTTAGGAGTCCTTCAACTTGCCAGACAGATGGAACAAGACCATCTCAGACCATATTGTACATTAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGATATCTTCACTGCAAGTATGATGCAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG] consensusID : consensus_6695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [AGTATCCGCCCGACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAGCTATTTCTGCNAAAAAAAAAAAAAAA] [+] EMBL AK068571 [AGTATCCGCCCGACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG ] [+] EMBL CA757952 [ AACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAACGGCGTGGCGTCGCCGGCGGCGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCCCCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGCACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACCAATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGTGGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTAGACAAATCATAATTACTTCATGATATACAGTTCAAAGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCANTGACGGTCATCAACTCTTTGATATANACTGTCGGGCATTGTCCCGAGCTATTTCTGCNAAAAAAAAAAAAAAA] consensusID : consensus_6695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [TACTCGTGCCNAATTCNGCACNACGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTANACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTNGACAAATCATAATTACTTCATGATATACAGTTCAAAGANTTGAACACTACTAGTTTANTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG] [+] EMBL AA752995 [TACTCGTGCCNAATTCNGCACNACGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTANACAGTGTTGTATGGTTGACAGTCCGACAGATCTGTGTNGACAAATCATAATTACTTCATGATATACAGTTCAAAGANTTGAACACTACTAGTTTANTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTCGTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCGGGCATTGTCCCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 GACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGGCCGGCCCCAAC 60 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 GGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGATTTCACGAGGCC 120 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 CCTCCTAGCGTGCTCATATCGAGACCTTCATGGATCGTCCGCAGCGAGGTGAGCTCAATC 180 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 CTTCCCTGCACCTCTCCCCTTTTGTTCTCGTGCCTGCGATTCGTCGAACACTTCGTAGAC 240 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 AGGAAGCGTAGTTGAATCGACCGGTAGGTTTTTCCTCGGCAGCGGGACATGGAGAGGAGG 300 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 TGTGGGGATGGGTTAGGGTAGCGGGTAAGATTGTGCTGCCTGCAGCAGAAGCTAGCGCGA 360 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 TGGGAAGAATCATGAGGAATCGGCAATTGAGTACCAAAAATGAGGAAATTAGGCCATGGT 420 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 TGGTAGAAATTGTTTCGGCATTACATTTACGGAATTGTTTTTTTCTGACCAAGTCGCCGG 480 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 AGGGGGGCGTTCCCCACCTGAATATATTTCAAACCATCTTACAGAATGTTAAGGTCGTCA 540 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 TGTGTATCAGAACTTTGTAGCAATTGATTCCACTTCTTTTTTATTGAATACCTGAAGCTT 600 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 AGCACCATGCAAATATGCAATCCACTGAACACTTTATAAGCAAAATTTACTTGCCATTCA 660 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 CTTCATGACTTAGATCTTGTTCCAACGTTTTTACAGCCAGCAATGCTTACTGTGTGTTTG 720 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 CTCTAGCCTGTAGTGATTTCTTAACTCCAAACATACCAAGGTTGGCCTTGCAGATTTATG 780 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 TGTTTTTTGATGTAGCGGTCGGGTTATCCATTATCTGAAAAAAATTGTGATAGTACATGA 840 consensus_6695#1 ------------------------------------------------------------ consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 GATTTATCATAGATTCATTGCGAGGGAAACATGGCAGGGGAAAAGGGGAATGGGGTTGAG 900 consensus_6695#1 AGTATCCGCCCGACCGCCCCTACCGCAACCTGTAGCCGCTGATGGCTTCGACGCCGGCGG 60 consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 AAAGGGCATGCTATTTTCCTTTCTGTGCCAACTGATACCCTCTCTGTTTGTCACTGAGTT 960 consensus_6695#1 CCGGCCCCAACGGCGTGGCGTCGCCGGCGGGGCAGGCTCCTTCGAGCTCGCTCCCCGGAT 120 consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 AGGAGTCCTTCAACTTGCCAG-ACAGATGGAACAAGACCATCTCAGACCATATTGTACAT 1019 consensus_6695#1 T--------TCACGAGGCCCCTCCTAGCGTGCTCATAT--------CGAGACCTTCATGG 164 consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 TAAGAATTGTCATTTGTTAACTTTTGACATGTTTATACACCAATCCTGATATCTTCACTG 1079 consensus_6695#1 ATCGTCCGCAGCGAGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGC 224 consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 CAAGTATGATGC-AGTCAAATATTAGGAGGGAGAGACCAAAAAGGCCTGATCCTCCATGC 1138 consensus_6695#1 ACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACC 284 consensus_6695#2 ------------------------------------------------------------ consensus_6695#0 ACCATCTGCAGAGGCACAGGCAAAATAGATTGCCGCAACTGTTTTGGTCGAGGGAGAACC 1198 consensus_6695#1 AATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGT 344 consensus_6695#2 ------------------------------------------TACTCGTGCCNAAT---T 15 consensus_6695#0 AATCATGCCGATCTTGTCATGCTCCCGAAGGGCGAATGGCCACAATGGTGCCGTATATGT 1258 * * ***** ** * consensus_6695#1 GGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCC 404 consensus_6695#2 CNGCACNACGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACC- 74 consensus_6695#0 GGTGGTAGCGGGTTAGATTACTGCCACCGTTGCCATGGAACCGGTGAATTTCGAGAACCC 1318 *************************************************** consensus_6695#1 ATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATG 464 consensus_6695#2 ATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTANACAGTGTTGTATG 134 consensus_6695#0 ATGGGCTTTCACTTCGCTACCATCCACAGGAAATGAACTTCACCTAGACAGTGTTGTATG 1378 ********************************************** ************* consensus_6695#1 GTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAA 524 consensus_6695#2 GTTGACAGTCCGACAGATCTGTGTNGACAAATCATAATTACTTCATGATATACAGTTCAA 194 consensus_6695#0 GTTGACAGTCCGACAGATCTGTGTAGAGAAATCATAATTACTTCATGATATACAGTTCAA 1438 ************************ ** ******************************** consensus_6695#1 AGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTC 584 consensus_6695#2 AGANTTGAACACTACTAGTTTANTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTC 254 consensus_6695#0 AGAGTTGAACACTACTAGTTTAGTTCGTGAAAAACTCCATTTTAGTTTATCGCAATGCTC 1498 *** ****************** ************************************* consensus_6695#1 GTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCG 644 consensus_6695#2 GTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCG 314 consensus_6695#0 GTGTTATGGAATCCGGACTGCTCGCAATGACGGTCATCAACTCTTTGATATAAACTGTCG 1558 ************************************************************ consensus_6695#1 GGCATTGTCCCGAGCTATTTCTGCNAAAAAAAAAAAAAAA 684 consensus_6695#2 GGCATTGTCCCGAG-------------------------- 328 consensus_6695#0 GGCATTGTCCCGAG-------------------------- 1572 ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||