|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1383 fasta sequence
[ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTTATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTTGCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGTATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGATGTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCGTTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAATACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAAAAA]
[+] EMBL CF313654 [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTTATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTTGCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGTATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGATGTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCA ]
[-] EMBL CF313655 [ CACTTTTTAGTTGTATTGAGCATCTGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAA ]
[-] EMBL CF313787 [ TCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTATATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCAGGTATAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCGTTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAATACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAAAAA]
consensusID : consensus_6696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGTCTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG]
[+] EMBL CF313786 [ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAGCCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCCTACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCGGAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGAGGGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTATAACATGGCTTCGCTGAGAAACGTTACTTTAACACAATCAATTTATTCCCGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTGATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGTTTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTAGTGTTCTGCTTTCTTGAAAAGCCCTGTCTGATCCTTCACAAATAAACATATACTATATGTTGAGTAACTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6696#0 ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG 60
consensus_6696#1 ATGCGCCTCTTTACAGCCAAACAAAGTGCGTGCGTGCGTGCTGTTCTTTCTCCGATCGAG 60
************************************************************
consensus_6696#0 CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC 120
consensus_6696#1 CCTTGGCCCTTGGAGGAGATGTTGTCGAGGATTACCGGCTCCCTCCCCATGGTGCGGTCC 120
************************************************************
consensus_6696#0 TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG 180
consensus_6696#1 TACTGCTTCTGCCTCCTGCTACTCTCAACCATCGTCGCCGTCACCGTCGCCGTTGCCGCG 180
************************************************************
consensus_6696#0 GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACGGTAATGCTCCTCTTGTT 240
consensus_6696#1 GAGGAGCTCCCCCCGGCGCCAACCACCTTCAAAACCTTGAACG----------------- 223
*******************************************
consensus_6696#0 ATTGCTAAAGGTGGATTTTCGGGAGTTTTTCCTGATTCCAGTGAATATGCCTTCGCTTTT 300
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 GCCTCCTCGCTCCACATAAGCTTGTGGTGTGACGTGCAACTGACGAAAGATGGCGTTGGT 360
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 ATTTGCCTCCGAGATTTACTTATGCAGAACTGCACCGATATCACTGAAATTTATCCAGAG 420
consensus_6696#1 ----------------------------------------------------------AG 225
**
consensus_6696#0 GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT 480
consensus_6696#1 GGGATGAAGGCATATCTAATCAATGGTGCACAGAAAACCGGATGGTTACCTGTGGACTAT 285
************************************************************
consensus_6696#0 AACATGGCTTCGCTGAGAAACGTTACTTTTGCCAGCCGGCTAGAGCGACCAAAAATGGAT 540
consensus_6696#1 AACATGGCTTCGCTGAGAAACGTTACTTT------------------------------- 314
*****************************
consensus_6696#0 GTTATCCTAGTGCCTTTTGTTTTCTTGGTTCTTTGACACTTTTTAGTTGTATTGAGCATC 600
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 TGGAATTATTGTCTTGTACTCACTGTCCACCATTGGACAGTAACACAATCAATTTATTCC 660
consensus_6696#1 -----------------------------------------AACACAATCAATTTATTCC 333
*******************
consensus_6696#0 CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG 720
consensus_6696#1 CGTACCCCGAGGTTCGACTCCAACTTCGACATCCTTTCTGTCACCGGCTTCATATCCTTG 393
************************************************************
consensus_6696#0 ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT 780
consensus_6696#1 ATCAAACCATCTTCTACTTGGTTGAATGTCGAGCATGACATTTTCTACAGAGAGCATGGT 453
************************************************************
consensus_6696#0 TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA 840
consensus_6696#1 TTGAACATGACAAATTACATTCTTTCAATACAGAAGCTTGGCTCTGTGAAGTACATCTCA 513
************************************************************
consensus_6696#0 TCACCTGAAATAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA 900
consensus_6696#1 TCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTGAAGTGAATCTA 573
********* **************************************************
consensus_6696#0 GTGTTCTGCTTTCTTGATAAAGCCCTGTCTGATCCTTCAACAAATAAAACATATAACTAT 960
consensus_6696#1 GTGTTCTGCTTTCTTGA-AAAGCCCTGTCTGATCCTTCA-CAAATAAA-CATATA-CTAT 629
***************** ********************* ******** ****** ****
consensus_6696#0 ATGTTGAGTAACTTGACATTTATTAAGACAATTGCTTCGGGTAAAATGGTTCCCAAAAAC 1020
consensus_6696#1 ATGTTGAGTAACTTG--------------------------------------------- 644
***************
consensus_6696#0 TATATATGGCCAGTAACAAGTGATAATTATATTCAGCTTCACACACAGATTGTCCAAGAA 1080
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 GCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATGGAATTTTTCCC 1140
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 TACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTT 1200
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 AGTGTTGATGGTGTATTAACAGATTTCCCACTTACTGCATCAGAGGCTATTGGTATGTCG 1260
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 TTGTACTTTGTAGATTTAAATTTAGTTTCCGTACTAGTGTAATTTTATTTGACAGCTGAA 1320
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 TACTGTCAATTGTACTGGAGACAAACTCAAAATAAATAATATGCTTCCAAGCTGTACCAA 1380
consensus_6696#1 ------------------------------------------------------------
consensus_6696#0 AAA 1383
consensus_6696#1 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||