cluster # 6707

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Oryza sativa
cluster # 6707 cluster # 6707 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6707#0 length = 622 sequences # 3

consensus_6707#1 length = 580 sequences # 1

consensusID : consensus_6707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 622
fasta sequence

                              [CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGAC-GGAGAGGCATACAGAGAGGCTAC-TGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAG-TTGTTAAATG-ATTTGAGTCCATGTCGTCCAGCATAG-TTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTAT-TTGA-GTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCGACCTACCTGAAGTTTTTGACT]

[+] EMBL CB685144             [CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGAC GGAGAGGCATACAGAGAGGCTAC TGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAG TTGTTAAATG TATTGAGTCCATGTCGTCCAGCATAG TTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTAT TTGA GTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCG                     ]
[+] EMBL BI118721             [                 ATAGAATGCTGAGCTTTTATGCACCATGTTGGTGTGGAGAACTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGAC GGAGAGGCATACAGAGAGGCTAC TGGCACGGCACCAGTGCACGAGGGCCGTAACGACAATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTGATTTGTTGCTGCCTCAGTTTGTTAAATG ATTTGAGTCCATGTCGTCCA CATAGTTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGGTTTTTGTATATCGAGGGCCACGAATGGATATTATTGCTGGCATGATAACGAAGTTGTTTCGACCTACCTGAAGTTTTTGACT]
[+] EMBL CA305699             [                       TGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGACNGGAGAGGCATACAGAGAGGCTACATGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAG NTGTTAAATGTATTg                                                                                                                                                                         ]




>consensus_6707#0
CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGT
TCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAG
AGGAACAGACGGAGAGGCATACAGAGAGGCTACTGGCACGGCACCAGTGCACGAGGGCCG
TAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTT
TGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTG
AGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATT
TTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAG
CTTTAATTTGTTGCTGCCTCAGTTGTTAAATGATTTGAGTCCATGTCGTCCAGCATAGTT
TGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCC
GTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTC
GACCTACCTGAAGTTTTTGACT

consensusID : consensus_6707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [ANNAGGGGGGGGGGGNATTTCCNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTGGGGGTTTTGGNGGANAGGGGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCATGCCNGGGGGCCNNAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCCTGNGCACGGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCATTAGAGGTGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAAGTTGTAGGAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTATTGAGTCCATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCGACAATTAAAAAAAA]

[+] EMBL AA753646             [ANNAGGGGGGGGGGGNATTTCCNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTGGGGGTTTTGGNGGANAGGGGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCATGCCNGGGGGCCNNAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCCTGNGCACGGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCATTAGAGGTGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAAGTTGTAGGAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTATTGAGTCCATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCGACAATTAAAAAAAA]




>consensus_6707#1
ANNAGGGGGGGGGGGNATTTCCNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTG
GGGGTTTTGGNGGANAGGGGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCATGCCNG
GGGGCCNNAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCC
TGNGCACGGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCA
TTAGAGGTGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAA
GTTGTAGGAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTG
CTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTAT
TGAGTCCATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCG
TTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTT
GTTGTCATGATAATGAAGTTGCTTCGACAATTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6707#0      CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGT 60
consensus_6707#1      ---------------------------------------ANNAGG--GGGGGGGGGNATT 19
                                                             *  ***  ** * ** * * *

consensus_6707#0      TCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAG 120
consensus_6707#1      TC----CNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTG----GGGGTTTTGGN 71
                      **      ** *** ** * * ** *******   *** * ***     * * ** **  

consensus_6707#0      AGGAACAGACGGAGAGGCATACAGAGAGGCTACTGGCACGGCACCAGTGCACGAGGGCCG 180
consensus_6707#1      GGANAGG---GGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCA-TGCCNGGGGGCCN 127
                       *  *     ** * **** **   * ** ** * ** ***  *** ***  * ***** 

consensus_6707#0      TAA-CGACGATGCTGTTGC-GGCTGCGGAGGAAGCAGCGTTCTG--CAAAGCCTGCGCAC 236
consensus_6707#1      NAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCCTGNGCAC 187
                       ** *** **  ** ** * ** *****  * * *   *** *   **** **** ****

consensus_6707#0      GGTTT--GGTTTCGGCCTCTA--CCTATACC--ACCAGGAC--GAGATCCCA--TAGAGA 286
consensus_6707#1      GGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCATTAGAGG 247
                      ** **  ***** ***** *   ********  ******    **** ***   ***** 

consensus_6707#0      TGAGGATGGCTTTGAGGCTC--ATTTCTGCAGAGGATCT-GGTGGTCACAAAGTTTGTAG 343
consensus_6707#1      TGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAAGTTGTAG 307
                      ** ** ******** ** *   *************** * ********  **  ******

consensus_6707#0      GAAAACC-GCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGC 402
consensus_6707#1      GAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGC 367
                      ******* ****************************************************

consensus_6707#0      ATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGATTTGAGTCC 462
consensus_6707#1      ATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTATTGAGTCC 427
                      **************************************************  ********

consensus_6707#0      ATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATA 522
consensus_6707#1      ATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATA 487
                      ************************************************************

consensus_6707#0      GTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCA 582
consensus_6707#1      GTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCA 547
                      ************************************************************

consensus_6707#0      TGATAATGAAGTTGCTTCGACCTACCTGAAGTTTTTGACT 622
consensus_6707#1      TGATAATGAAGTTGCTTCGACAATTAAAAAAAA------- 580
                      *********************       **