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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1810 fasta sequence
[CCACAAACGCACGCCCGCACGCGCGCGCGCGCGCTCAGAGACCTCCGTCGCCGCCCGCCGCACGCCGGCGACCCACCGCGCCGCACGATGCCGCCGACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAAATCCGACTAGGAAAATATGAACATTTCTTTGTGTGGTATACCACGAGCTCGGAAAATTGAAGAACAGTGCTAACTTGAGGTAGATCATGTAGGGTATACACTGTAGATCTGTTTGTCTGATATCCTTGTAGGCTTCTAATCATTCAAAATTTGCTAGCATTGTTAAGACTTTAAGACATACAGTGTCACACCAGTTGA]
[+] EMBL AK111418 [CCACAAACGCACGCCCGCACGCGCGCGCGCGCGCTCAGAGACCTCCGTCGCCGCCCGCCGCACGCCGGCGACCCACCGCGCCGCACGATGCCGCCGACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAAATCCGACTAGGAAAATATGAACATTTCTTTGTGTGGTATACCACGAGCTCGGAAAATTGAAGAACAGTGCTAACTTGAGGTAGATCATGTAGGGTATACACTGTAGATCTGTTTGTCTGATATCCTTGTAGGCTTCTAATCATTCAAAATTTGCTAGCATTGTTAAGACTTTAAGACATACAGTGTCACACCAGTTGA]
[+] EMBL AB096003 [ ACCTCAGTGAGCCCACCAAGAACAGCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCGGGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCCGACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCCGTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGGTTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTCTTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCAGCGCCTTGGTGCGTCGACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTCGGCGACCTGCGGCGGGAGGCGCCCGGTGTGGCCGTGCACCAGGTGGACGCGCACAACGTGGTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAGGTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCATGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGTGAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATAC GAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAGAAATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACCAGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTC ]
consensusID : consensus_6711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence
[GCAGCCATAGAGGCGCTTCTCGGCAGCAAGGACTGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCCAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCAC]
[+] EMBL CB000465 [GCAGCCATAGAGGCGCTTCTCGGCAGCAAGGACTGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCCAG ]
[+] EMBL CA999324 [ AGCCATAGAGGCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGACCGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGGCACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAGTCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGCTATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTGATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAATGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAAAATGCATGGATTCATGAGTATGAGATAGATGGCAGGGACCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAAGGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATTCGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAACGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6711#0 CCACAAACGCACGCCCGCACGCGCGCGCGCGCGCTCAGAGACCTCCGTCGCCGCCCGCCG 60
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 CACGCCGGCGACCCACCGCGCCGCACGATGCCGCCGACCTCAGTGAGCCCACCAAGAACA 120
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GCGCCGGGGCCGGCGAACCCGAGCCCGGCACACCCGTCCCGCGTGCGGGTGATCCACCCG 180
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GGCGGCGGGAAGCCCGGTGGGCCGGTGGTGTACTGGATGCTGCGGGACCAGCGGCTCGCC 240
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GACAACTGGGCGCTCCTCCACGCCGCCGGCCTCGCCGCCGCCTCCGCGTCCCCGCTCGCC 300
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GTCGCGTTCGCGCTGTTCCCGAGGCCCTTCCTCCTCTCCGCCCGCCGCCGCCAGCTCGGG 360
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 TTCCTCCTCCGCGGCCTCCGCCGCCTCGCCGCCGACGCCGCCGCCCGCCACCTCCCCTTC 420
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 TTCCTCTTCACCGGTGGGCCCGCGGAGATCCCGGCGCTGGTGCGGCGCCTTGGTGCGTCG 480
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 ACGCTGGTCGCCGACTTCTCGCCGCTGCGGCCGGTGAGGGAGGCGCTCGACGCGGTGGTC 540
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GGCGACCTGCGGCGGGAGGCGCCCGGCGTGGCCGTGCACCAGGTGGACGCGCACAACGTG 600
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GTGCCTGTGTGGACGGCGTCGGCGAAGATGGAGTATTCAGCCAAGACCTTCAGAGGCAAG 660
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GTGAGCAAGGTGATGGATGAGTACCTTGTGGAGTTCCCTGAATTGCCGGCGGTGGTGCCA 720
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 TGGGACAGGGAGCAGCCGGAGGGGGTCGACTGGGACGCACTCATCGCCAGGGTTTGCAGT 780
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GAGGCGGAGAATGTGCCGGAGATTGACTGGTGTGAGCCTGGAGAGGAAGCAGCCATAGAG 840
consensus_6711#1 ------------------------------------------------GCAGCCATAGAG 12
************
consensus_6711#0 GCGCTTCTCGGCAGCAAGGATGGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGAC 900
consensus_6711#1 GCGCTTCTCGGCAGCAAGGACTGATTCCTGACGAAGAGGATCAAGAGCTATGAAACTGAC 72
******************** **************************************
consensus_6711#0 CGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGG 960
consensus_6711#1 CGGAATGATCCCACGAAACCACGGGCATTGTCTGGGCTTTCACCATACCTTCATTTTGGG 132
************************************************************
consensus_6711#0 CACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAG 1020
consensus_6711#1 CACATTTCGGCACAGCGGTGTGCGCTCGAGGCAAAGAAATGCCGACATCTTAGTCCCAAG 192
************************************************************
consensus_6711#0 TCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGC 1080
consensus_6711#1 TCCGTCGATGCTTTCTTGGAGGAATTGGTTGTAAGGAGGGAATTAGCTGACAACTTCTGC 252
************************************************************
consensus_6711#0 TATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTG 1140
consensus_6711#1 TATTACCAACCTCAATATGATTCGCTGTCTGGTGCATGGGAATGGGCAAGGAAGACACTG 312
************************************************************
consensus_6711#0 ATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAA 1200
consensus_6711#1 ATGGATCATGCTGCTGATAAAAGAGAGCATATCTATACGTGAGAGGGAACAGCTTGAGAA 372
************************************************************
consensus_6711#0 TGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAA 1260
consensus_6711#1 TGCCAAAACACATGATCCTTTGTGGAATGCATCGCAGTTGGAGATGGTTCACCATGGAAA 432
************************************************************
consensus_6711#0 AATGCATGGATTCATGAGAATGTACTGGGCCAAAAAGATTCTAGAATGGACTAGTGGACC 1320
consensus_6711#1 AATGCATGGATTCATGAG------------------------------------------ 450
******************
consensus_6711#0 AGAAGAAGCACTTTCAACTGCAATTTATTTAAATGACAAGTATGAGATAGATGGCAGGGA 1380
consensus_6711#1 ----------------------------------------TATGAGATAGATGGCAGGGA 470
********************
consensus_6711#0 CCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAA 1440
consensus_6711#1 CCCCAGTGGTTACGTCGGATGTATGTGGTCCATATGTGGCCTCCATGATCAGGGTTGGAA 530
************************************************************
consensus_6711#0 GGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATT 1500
consensus_6711#1 GGAGCGTCCAGTATTTGGAAAGATACGTTACATGAATTACGCTGGCTGCAAGAGAAAATT 590
************************************************************
consensus_6711#0 CGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCAAGAAGAGGAA 1560
consensus_6711#1 CGATGTTGACGCTTACATTTCTTATGTCAAGAGATTAGCTGGTCAATCCCAGAAGAGGAA 650
************************************************* **********
consensus_6711#0 CGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCACTAAATCCGACT 1620
consensus_6711#1 CGCTGAGGAGTCTCCAAATCCTGTAGTCAAGCTTTCCAAGTCTCAGCAC----------- 699
*************************************************
consensus_6711#0 AGGAAAATATGAACATTTCTTTGTGTGGTATACCACGAGCTCGGAAAATTGAAGAACAGT 1680
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 GCTAACTTGAGGTAGATCATGTAGGGTATACACTGTAGATCTGTTTGTCTGATATCCTTG 1740
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 TAGGCTTCTAATCATTCAAAATTTGCTAGCATTGTTAAGACTTTAAGACATACAGTGTCA 1800
consensus_6711#1 ------------------------------------------------------------
consensus_6711#0 CACCAGTTGA 1810
consensus_6711#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||