These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 992 fasta sequence [GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCA-GGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTCTGCCTCGGCCTCGTTCCCAACGTCAACATGATCATAACCGACTACTGGATGCCCGGCATGACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCGGTGGTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGTATCAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTCAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTGTGTGCTCTGCAAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCACAATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAGATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATTA] [+] EMBL AK059734 [GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTGAGTTGATCAATGGCGGCAGCGGCGCA GGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGCTCGAGCTCCTCTGCCTCGGCCTCGTCCCCAACGTCAACATGATCATCACCGACTACTGGATGCCCGGCATGACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCGGTGGTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGTATCAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTCAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTGTGTGCTCTGCAAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCACAATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAGATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATTA] [+] EMBL AU068709 [ CCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTNAGTTGATCAANGGCGGCAGCGGCGCA GGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTNCTGGCGGTGGACGACAACTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTNCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTCTNCCTCGGCCTNGTTCCCAAAGTCAACATGATCATAACCGA ] [+] EMBL AU068710 [ CTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGGATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCANGGCTCCGGCGGCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGGGACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAGATGCACGTCCTGGCGGTGGACGACANCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTCCGGAGCTCCAAGTACAGGGTGACCACGGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCTCTGCCTCGGCCTCGTTCCCAACGTCAACATGATCATNACCGACTACT ] consensusID : consensus_6719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CGCAGATCCCTCTCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGCGCTCAAGCTCCTTTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTACTGGATGCCCGGCATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCCAAGGAGATCCCGGTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGGCTTTGCAGCCGTATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTCTGCGAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAAAAAAAAAAAA] [-] EMBL CA763159 [CGCAGATCCCTCTCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGCGCTCAAGCTCCTTTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTACTGGATGCCCGGCATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCCAAGGAGATCCCGGTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGCCTGGAGGAGGGCGCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGGCTTTGCAGCCGTATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATTTTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTTCTGCTGCTGCCTCAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAGTTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTCTGCGAAGACGCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCAGGAGGTTTCTCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6719#0 GCAAAGCCTCTTCTCCTCTTCTTCTCCTACTCGCTTACTCAATCGCTCGAGGATTCTTGG 60 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 ATTGGATTATTGGGTTGGATTTTNAGTTGATCAATGGCGGCAGCGGCGCAGGCTCCGGCG 120 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 GCGGCGAAGGTGGTGGTGGCGACGTCGCCGAGGGCAGGCGGAGGCGGAGGCGGCGGCGGG 180 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 GACAGGAAGGTGGTGCCGGTTGTGGTGGCGGCGGCGGCCGGCGACGAGGCGCAGAGCGAG 240 consensus_6719#1 ------------------------------------------------------------ consensus_6719#0 ATGCACGTGCTGGCGGTGGACGACAGCTCCGTGGACCGCGCCGTCATCGCCAAGATCCTC 300 consensus_6719#1 -----------------------------------------------CGC-AGATCCCTC 12 *** * **** consensus_6719#0 CGGAGCTCCAAGTACAGGGTGACCAC-GGTGGAGTCGGCGACGAGGGCGTTCGAGCTTCT 359 consensus_6719#1 TCGAGCTCAAAAGACGGGGTGACCCCCGGTGGATTCGCACACAAGGGCGCTCAAGCTCCT 72 ****** ** ** ******** * ****** *** ** ****** ** **** ** consensus_6719#0 CTGCCTCGGCCTCGTTCCCAACG-TCAACATGATCATA-ACCGACTACTGGATGCCCGGC 417 consensus_6719#1 TTCGCTCGGCCTCGTCCCCAACGGTCAACATGATCTTCCACGGACTACTGGATGCCCGGC 132 * *********** ******* *********** * ** ****************** consensus_6719#0 ATGACCGGCTACGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGCTCAAGGAGATCCCG 477 consensus_6719#1 ATGACCGGTACCGAGCTCCTCAAGCGCGTCAAGGAATCGTCTCAGTCCAAGGAGATCCCG 192 ******** ********************************** ************* consensus_6719#0 GTGGTGATCATGTCGTCGGAGAACGTGCCGAACCGGATCAGCCGGTGCCTGGAGGAGGGC 537 consensus_6719#1 GTGGTGATCACGTCGTCGGAGAACGTGCCCAACCGGATCAGCCGGTGCCTGGAGGAGGGC 252 ********** ****************** ****************************** consensus_6719#0 GCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTCCGACGTGTCGCGGCTCTGCAGCCGT 597 consensus_6719#1 GCCGAGGACTTCCTGCTCAAGCCCGTACGCCCCTTTGACGTGTCGCGGCTTTGCAGCCGT 312 ********************************** ************** ********* consensus_6719#0 ATCAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATT 657 consensus_6719#1 ATTAGATGATCGCTCGCTCGCCATGTTGGATCATGGAGAGGATGATTAACTCCTAGGATT 372 ** ********************************************************* consensus_6719#0 TTTTTTGGTGGCTTTCT----CAATTCTTGGACATAGTTCTTCTTCTTCTGCTGCTGCCT 713 consensus_6719#1 TTTTTTGGTGGCTTTCTTTCTCAATTCTTGGACATAGTTCTTCTT---CTGCTGCTGCCT 429 ***************** ************************ ************ consensus_6719#0 CAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAG 773 consensus_6719#1 CAAACAAGAAGCTAAACATTTGGGGCTTTAGGAGATGATTAGCCTTACTGCCTTAGCAAG 489 ************************************************************ consensus_6719#0 TTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCT--GTGTGCTCTGCAAAGAC 831 consensus_6719#1 TTAGAATTGAAATTAGGTGTCAGGCATTTGCTTGTTCCCCTCTGTGTGCTCTGCGAAGAC 549 ***************************************** *********** ***** consensus_6719#0 GCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTCTGAAGCTTCTGTTCAGGAGGTTTC 891 consensus_6719#1 GCCATGAAAAAAAAACAGAGAGAGAAGAGATTCTTTTGAAGCTTCTGTTCAGGAGGTTTC 609 *********************************** ************************ consensus_6719#0 TCTTGTCACAATGTTGAAATGGCACCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAG 951 consensus_6719#1 TCTTGTCCCAATGTTGAAATGGCATCAGAGCATCAATCTGTTCTTTTTAACTGTTTCAAA 669 ******* **************** ********************************** consensus_6719#0 ATCGGTCAGAGTTTTGACATTAATTTAAGTCTTGCCAATTA 992 consensus_6719#1 AAAAAAAAAA------------------------------- 679 * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||