These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence [CCTTTTTTTTTAGTATCTGAACGATCTTTGATTCTTTATCCTGAAGCTAATGCTTTGGCTCCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAAATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGATGTGGTGTCTTGGCGTCGCCGATGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTCGACACGGGCCGTGGCGGCGGCGATGGAGAGGGACCACACGCCGGAGAAGACCGCGGCCGAGGCCGAGGCGACCGC] [+] EMBL CB669495 [CCTTTTTTTTTAGTATCTGAACGATCTTTGATTCTTTATCCTGAAGCTAATGCTTTGGCTCCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAAATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGATGTGGTGTCTTGGCGTCGCCGATGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTCGACACGGGCCGTGGCG ] [+] EMBL CB669534 [ ggATCTGAACGATCTTTGATTCTTTATCCTGACCCTAATGCTTTGGCTCCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAAATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGATGTGGTGTCTTGGCGTCGCCGATGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTCGACACGGGCCGTGGCGGCGGCGATGGAGAGGGACCACACGCCGGAGAAGACCGCGGCCGAGGCCGAGGCGACCGC] [-] EMBL AK111117 [ AAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATGTTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGACCCACCATATGCGCAGCGACGATGGCTTGGT ] consensusID : consensus_6726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [TTTTTTTTTTGGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTGCGTTTCTAGTGATGTTGGTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGGCTTCGCCGCGAATCCAGCGCATCAGGTCGGGAACCAACATATGCGCAGGAGATGGCTTGGTGGTGATGACTGTGGCGGTCTATGGCGTCAGCCGACTGGTGTGG] [-] EMBL BI813622 [TTTTTTTTTTGGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATTTTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTGCGTTTCTAGTGATGTTGGTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGTTCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCAGGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGTTGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGGCGTGCTGCTTACTGGCTGACCGGGCTTCGCCGCGAATCCAGCGCATCAGGTCGGGAACCAACATATGCGCAGGAGATGGCTTGGTGGTGATGACTGTGGCGGTCTATGGCGTCAGCCGACTGGTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6726#0 CCTTTTTTTTTAGTATCTGAACGATCTTTGATTCTTTATCCTGAAGCTAATGCTTTGGCT 60 consensus_6726#1 ------------------------------------------------------------ consensus_6726#0 CCCATGTGAATACTAGCAGTATGCTAGTAGTACGATGATGATGATGATGAAACAAAGGAA 120 consensus_6726#1 ---------------------------------------------------TTTTTTTTT 9 consensus_6726#0 ATGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATT 180 consensus_6726#1 TGGGAGCTCTCTAAACATGCCAGTACTATGATTATCAAAAGCCTAAAAAAAGGCCCCATT 69 ********************************************************** consensus_6726#0 TTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTTTGCGTTTCTAGTGATG 240 consensus_6726#1 TTTATGTACAGATGTCTTTCAAAGTAGCAAAATTCGATCGAGTT-GCGTTTCTAGTGATG 128 ******************************************** *************** consensus_6726#0 TTTGGTTGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGT 300 consensus_6726#1 TTGG--TGGGAATTCATCAGAAGCTTGTGCTCAGAATGTTGAGCAGTGAGACTCTGGTGT 186 ** * ****************************************************** consensus_6726#0 TCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCA 360 consensus_6726#1 TCACCAGAGCGCGGAACACCTTCTCGCCGATGCTCTCCACGTCCGCGATGCACCGTCCCA 246 ************************************************************ consensus_6726#0 GGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGT 420 consensus_6726#1 GGTTGTCCAGGCGCTCGAACGCCGCCTTCCGTTCTCTCTCGTCCGGGTCCACGGCGACGT 306 ************************************************************ consensus_6726#0 TGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGG 480 consensus_6726#1 TGGGTTGGGGCCGCGCCGTGGCGGCGGAGGAGGTGGAGGAGGAGGAGGCGTCACTGTCGG 366 ************************************************************ consensus_6726#0 CGTGCTGCTTACTGGCTGACCGGCGCTTCGCCCGCGACATCCAGCGCATCAGGTCGGCGA 540 consensus_6726#1 CGTGCTGCTTACTGGCTGACCGG-GCTTCGCC-GCGA-ATCCAGCGCATCAGGTCGG-GA 422 *********************** ******** **** ******************* ** consensus_6726#0 CCCACCATATGCGCAGCGACGATGGCTTGGTGGTGATGA-TGTGGTG-TCT-TGGCGTC- 596 consensus_6726#1 ACCAACATATGCGCAGGA--GATGGCTTGGTGGTGATGACTGTGGCGGTCTATGGCGTCA 480 *** *********** ******************* ***** * *** ******* consensus_6726#0 GCCGA-TGGTGTGGTGAATCTCGCCGGGGAGGGCATCCAGCAGGGCGTGGCGGCGACCTC 655 consensus_6726#1 GCCGACTGGTGTGG---------------------------------------------- 494 ***** ******** consensus_6726#0 GACACGGGCCGTGGCGGCGGCGATGGAGAGGGACCACACGCCGGAGAAGACCGCGGCCGA 715 consensus_6726#1 ------------------------------------------------------------ consensus_6726#0 GGCCGAGGCGACCGC 730 consensus_6726#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||