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Oryza sativa
cluster # 6727 cluster # 6727       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6727#0 length = 1369 sequences # 3  
consensus_6727#1 length = 470 sequences # 1  

consensusID : consensus_6727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1369
fasta sequence
                              [GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATCTTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA-GACAATGGGGAA-CAGAGGAAGAACTTGGAAATGGCTTAATTAGC-TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG---GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC--AAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA]

[+] EMBL AK061486             [GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATCTTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA GACAATGGGGAA CAGAGGAAGAACTTGGAAATGGCTTAATTAGC TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG   GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC  AAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA]
[+] EMBL AK098926             [                                                               CTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA GACAATGGGGAA CAGAGGAAGAACTTGGAAATGGCTTAATTAGC TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG   GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC  AAGTAAAGTTATTAATCAAGT            ]
[+] EMBL BM419100             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGGA GCCCGGGCTGACCGCGCTCACCGC GCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCGGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCNCCGGACGACAATGGAGAACCAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCCNCAGTAAAGTGATTAATCAAGTTTCAaaaa    ]


>consensus_6727#0 GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATC TTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCC GTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGC AGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGC CCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCG CTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCC CCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAAC GTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAAC ACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAG AAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCC CGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACC ACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGAC TTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTG CTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGG AGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACG CCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTG ATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCG TTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGC ATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTC CGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGAGACAAT GGGGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCTTTTTTTTTTGCATAATTTCCT TTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGGAAGATGGTTCAAAAG GCTTAGTAGGATGTTCAAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA



consensusID : consensus_6727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence
                              [GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCTCGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCGTCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA]

[+] EMBL BI813616             [GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCTCGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCGTCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA]


>consensus_6727#1 GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCT CGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCG TCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATC GCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTG CTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGA CACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAA TTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATG GTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6727#0      GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATC 60
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      TTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCC 120
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      GTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGC 180
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      AGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGC 240
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      CCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCG 300
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      CTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCC 360
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      CCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAAC 420
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      GTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAAC 480
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      ACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAG 540
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      AAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCC 600
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      CGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACC 660
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      ACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGAC 720
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      TTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTG 780
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      CTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGG 840
consensus_6727#1      ------------------------------------------------------------
                                                                                  

consensus_6727#0      AGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACG 900
consensus_6727#1      ---------------------------------------------GCCCTGTTTCTCACC 15
                                                                   ** *****  **** 

consensus_6727#0      CCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTG 960
consensus_6727#1      CCGCT-CTGGCTTCGATCCC-TCGTGGCC-GTTGGCCCCC--CTGGTGCTCGTCGGCGTG 70
                      ***** ***** ******** ****** * ******** *  ******************

consensus_6727#0      ATGATGATGCGCGCGGTGGC-GGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGC 1019
consensus_6727#1      ATGATGATGCGC-CGGTGGCCGGAGGTGGACTGG-CCGACATGAGGCAG-CCGT-CCGGC 126
                      ************ ******* ************* ************** **** *****

consensus_6727#0      GTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGG 1079
consensus_6727#1      GTTCCTCACC-TGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCG-CGG 184
                      ********** ********************************************* ***

consensus_6727#0      CATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCT 1139
consensus_6727#1      CATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCG--GTGCT 242
                      *************************************************  **  *****

consensus_6727#0      CCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCC-GGAGACA 1198
consensus_6727#1      CCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACA 302
                      **************************************************** *******

consensus_6727#0      -ATGGGGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGC-TTTTTTTTTTGCATAATT 1256
consensus_6727#1      CATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATT 362
                       **** *********************************** ******************

consensus_6727#0      TCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG---GAAGATGGT 1313
consensus_6727#1      TCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGT 422
                      ********* **************************************   *********

consensus_6727#0      TCAAAAGGCTTAGTAGGATGTTCAAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA 1369
consensus_6727#1      TCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA-------- 470
                      **** **** ********************** *****  **     *        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)