These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1369 fasta sequence [GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATCTTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA-GACAATGGGGAA-CAGAGGAAGAACTTGGAAATGGCTTAATTAGC-TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG---GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC--AAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA] [+] EMBL AK061486 [GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATCTTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA GACAATGGGGAA CAGAGGAAGAACTTGGAAATGGCTTAATTAGC TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC AAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA] [+] EMBL AK098926 [ CTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCCGTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGCAGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGCCCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCGCTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCCCCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAACGTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAACACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAGAAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCCCGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACCACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGACTTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTGCTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGGAGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCGGA GACAATGGGGAA CAGAGGAAGAACTTGGAAATGGCTTAATTAGC TTTTTTTTTTGCATAATTTCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG GAAGATGGTTCAAAAGGCTTAGTAGGATGTTC AAGTAAAGTTATTAATCAAGT ] [+] EMBL BM419100 [ GGGA GCCCGGGCTGACCGCGCTCACCGC GCGGCCTACTTCGCGGCGGCGCTGTTCGTCACGCCGCTGCTGGCGTCGATCCCGTCGTGGGCGGTTGGCCCGCCGCTGGTGCTCGTCGGCGTGATGATGATGCGCGCGGTGGCGGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGCGTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCNCCGGACGACAATGGAGAACCAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCCNCAGTAAAGTGATTAATCAAGTTTCAaaaa ] consensusID : consensus_6727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCTCGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCGTCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA] [+] EMBL BI813616 [GCCCTGTTTCTCACCCCGCTCTGGCTTCGATCCCTCGTGGCCGTTGGCCCCCCTGGTGCTCGTCGGCGTGATGATGATGCGCCGGTGGCCGGAGGTGGACTGGCCGACATGAGGCAGCCGTCCGGCGTTCCTCACCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGCGGCATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCGGTGCTCCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACACATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATTTCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGTTCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6727#0 GGCTCCGGCACGCTCCCCTACCGCACCGCGCTCGCCGCCGTCTTCCTCGAGGGACTCATC 60 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 TTCCTCTTCATCTCCCTCGTCGGCCTGCGCTCCAAGCTCGCCAAGTTCATCCCCAAGCCC 120 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 GTCCGGATATCGTCGTCGGCGGGGATCGGGCTCTTCTTGGCGTTCATCGGGCTGCAGAGC 180 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 AGCGAAGGCGTGGGCCTCGTCGGGTTCAGCTCGTCGACGCTCGTCACGCTCGGCGCGTGC 240 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 CCGGCGTCGCAGCGCGCGTCCGTGGCGCCGGTCGTGACGTTCCCCAATGGCACGGTGGCG 300 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 CTCATGCCGGGCGGCACCGTCTCCGGCGGGATACTCTGCCTGTCCGGCCGGATGACCTCC 360 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 CCGACCTTCTGGCTCGCCGTCGTCGGCTTCCTCATCATCGCCTTCTGCCTCATCAAGAAC 420 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 GTCAAGGGCGCCATGATCTACGGCATCCTCTTCGTCACCTTCATCTCCTGGCCGCGCAAC 480 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 ACCGCCGTCACGGTGTTCCCGGACACGCCCGCCGGCGACGAGAGCTTCGGCTACTTCAAG 540 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 AAGGTGTTCGACGTGCACCGCATCCAGTCCACCGCCGGCGCGCTCGACTTCCGGGGAGCC 600 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 CGCCACGGCTACTTCTGGGAGGCGCTCTTCACGTTCCTGTACGTGGACATCCTCGACACC 660 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 ACGGGGGGGCTCTACTCCATGGCGAGGTTCGCCGGCTTCGTGGACGACGCGACGGGGGAC 720 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 TTCGAGGGGCAGTACTTCGCCTTCATGTCCGACGCGACGGCCATCGTGTTCGGGTCGCTG 780 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 CTGGGGACGTCGCCGGTGACGGCGTTCATCGAGTCGTCGACGGGGATCAGGGAGGGCGGG 840 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 AGGACGGGGCTGACGGCGCTCACCGCGGCGGCCTACTTCGCGGCGGCGCTGTTCGTCACG 900 consensus_6727#1 ---------------------------------------------GCCCTGTTTCTCACC 15 ** ***** **** consensus_6727#0 CCGCTGCTGGCGTCGATCCCGTCGTGGGCAGTTGGCCCGCCGCTGGTGCTCGTCGGCGTG 960 consensus_6727#1 CCGCT-CTGGCTTCGATCCC-TCGTGGCC-GTTGGCCCCC--CTGGTGCTCGTCGGCGTG 70 ***** ***** ******** ****** * ******** * ****************** consensus_6727#0 ATGATGATGCGCGCGGTGGC-GGAGGTGGACTGGGCCGACATGAGGCAGGCCGTGCCGGC 1019 consensus_6727#1 ATGATGATGCGC-CGGTGGCCGGAGGTGGACTGG-CCGACATGAGGCAG-CCGT-CCGGC 126 ************ ******* ************* ************** **** ***** consensus_6727#0 GTTCCTCACCCTGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCGGCGG 1079 consensus_6727#1 GTTCCTCACC-TGGCGCTCATGCCGCTCACCTACTCCATCGCCTACGGCCTCATCG-CGG 184 ********** ********************************************* *** consensus_6727#0 CATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCGTCGCGGTGCT 1139 consensus_6727#1 CATCGCCTCCTACATGCTGCTCAACTCATGGGACTGGGCCTGCCACGCCTCCG--GTGCT 242 ************************************************* ** ***** consensus_6727#0 CCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCC-GGAGACA 1198 consensus_6727#1 CCGCTCCCGGCGCCGGAGAGGGGCGCGCGCCGAGACGAGGAGCGCCGCCGCCCGGAGACA 302 **************************************************** ******* consensus_6727#0 -ATGGGGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGC-TTTTTTTTTTGCATAATT 1256 consensus_6727#1 CATGGAGAACAGAGGAAGAACTTGGAAATGGCTTAATTAGCATTTTTTTTTTGCATAATT 362 **** *********************************** ****************** consensus_6727#0 TCCTTTTTAAAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTG---GAAGATGGT 1313 consensus_6727#1 TCCTTTTTAGAAGATTTAGAAGGTGATTAGGATTTGCTATATATACTGTATGAAGATGGT 422 ********* ************************************** ********* consensus_6727#0 TCAAAAGGCTTAGTAGGATGTTCAAGTAAAGTTATTAATCAAGTTTCAGTCCCTGA 1369 consensus_6727#1 TCAACAGGCATAGTAGGATGTTCAAGTAAAGTGATTAAAAAAAAAAAA-------- 470 **** **** ********************** ***** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||