cluster # 673

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Oryza sativa
cluster # 673 cluster # 673 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_673#0 length = 396 sequences # 1

consensus_673#1 length = 329 sequences # 1

consensusID : consensus_673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGGAATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGTAAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAGAAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC]

[+] EMBL CF327219             [GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGGAATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGTAAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAGAAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC]




>consensus_673#0
GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCA
TTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGG
AATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGT
AAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGT
TAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAG
AAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC

consensusID : consensus_673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAACAAAAGGGCAAATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGTAAATTTGAACCTGGGGGAAAAAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAATTCCCAAAAAAAAAAAAACCGGAAACCAAAAAGGGAAAACCCGG]

[+] EMBL CF316172             [TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAACAAAAGGGCAAATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGTAAATTTGAACCTGGGGGAAAAAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAATTCCCAAAAAAAAAAAAACCGGAAACCAAAAAGGGAAAACCCGG]




>consensus_673#1
TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAACAAAAGGGCAA
ATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGTAAATTTGAACCTGGGGGAAA
AAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAATTCCCAAAAAAAAAA
AAACCGGAAACCAAAAAGGGAAAACCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_673#0      GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCA 60
consensus_673#1      -----TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCAT---CT 52
                            **** *  ** **  *    *   *        ****  *  **  **   * 

consensus_673#0      TTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 120
consensus_673#1      TAAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 112
                     * *   * * ***** ********************************************

consensus_673#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGG 180
consensus_673#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAAC-- 170
                     ***************************************  *  *  ** *  *****  

consensus_673#0      AATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGT 240
consensus_673#1      ----------AAAAGGGCAAATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGT 220
                               *** *** ********************** ** *********** ****

consensus_673#0      AAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGT 300
consensus_673#1      AAATTTGAACCTGGGGGAAAAAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGT 280
                     ************************** *********************************

consensus_673#0      TAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAG 360
consensus_673#1      TAAAATTCCCAAAAAAAAAAAAACCGGAAACCAAAAAGGGAAAACCCGG----------- 329
                     ***** * *********************** *****************           

consensus_673#0      AAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC 396
consensus_673#1      ------------------------------------