These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6732#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2267 fasta sequence [CACCAACGACACCGCCCTCCGCTCGCCGCCGGCGACCAACGCCGGTGATCTCTCCCCCCGCCCGCCCGCCCGTCCACACCGGCCGGAGCATCCGATCGACCGGCCTCCCCCCCGCCCCAGACACCATCGCCTTCCCACCGCTGCCGCTCGTCCCGTCTCACCGATCCCTCCATCCTTGGTCGAATCAATCGGAGATAACATGTCTTTTGAAGATAAAGCAATGGCTAGCCGTGTCGCTTCACCCTCACCAAAATCTATGGCTTCAGAATCAGACCCAAGCATGATGTTAGCTATCACTTCGAATATGGAGCATTCTCAAGCAAATAACCAGTCAGTTTCAGTTCTTGGTCCAGTGGCTATCTTTTGGGATATTGAGAACTGCCCTGTTCCAAGTGATGTACGACCAGAAGATGTTGCTGGAAATGTCCGGATGGCATTACGGCTACATCCTGTTGTTAAGGGTGCTGTGACAATGCTCTCTGCATACGGTGATTTCAATGCCTCCCCAAGAAGACTCAGAGAGGGATGTCAAAGAACTGGAGTCAAACTTGTTGATGTTCCAAATGGAAGGAAAGATGCTGCTGATAAGGCTACACTGGTTGATATGTTTCTATTTGCATTGGACAATCGTCCACCATCATCCATTATGCTTATATCCGGTGACGTGGACTTTGCTCCTGCATTGCATATACTTGGTCAGCGTGGATACACTATTGTCCTGGCCATTCCATCCTCAGTTACTGTATCTTCAGCATTGAGCAGTGCTGGGAGTTTCGTCTGGGACTGGCCTAGTCTTGCTCGTGGTGAAGGTATTGTGGCCCCTAGATCCATAGGGCGCCGCTTTGCCGATCCTCCAGGATATCAACATGGTGGGAATTTTGGGTCGTTCCCTGACACGCAGAATGAAGAGGAGGCCATTGTCTACATGGGAACTTCAAGAAATGAATGCAGTGGTAGAACTACCAGCAACCAGATATATTGCTATAACTCTTCTCAAACCACTAGAGAACCATCCAAAGCTTTCTATACAGTTACAGATGGGAACTGTGGCACATCATCAAGGTCACATAATTTAGCATGTAGTTTGAATGAAGGTCCAGATGTAGACCAGGGTTTGCCAGATGAGCGGTCATGGTGGGTTCGTCCTGGTGATCTTCAAGGTTTGAAGGGCCAATTGTTGCGGTTGTTTGAGTTATCAGGTGGATCTGTTCCACTTGTCCGTGTTCCTTCAGAATATCTAAAACTCTTTGGAAGACACCTCTATGTATCAGAATATGGAGCTGTTAAACTTATTCATCTCTTTGAAAAGCTTGCTGACTCTTTTGTGGTCATAGGGAAGGGTCATAGAAAGGTGATTTGCCTTCGAAATTCTGGTGATAGTAACCTGAAGAAATATTCAACCACACCAATTATTTTGAAAAAGGAAAATAGAGGTGGTTCTATTCTTGATGAAAGCACTATAGGAACAGGTCAGCAGTTGGGCAGCTCATCAGATGATTTCTCAGAGGATGAACGGAACATTAACCCAGATGTAGATGGAGCATATGCCTTCGATAGCCATCTAGACAATTTCAGACAGGAGATTCAGGAGCTTCTTGTCTGTTACTCTTGCCCTGTTCCACTGGGTAATTTCAAGTCTCTCTATGAACAACGGTACAAGAAGACTCTTATCTATGAGAGCTTTGGTGTCGATGGTCTGGAGGAGCTAGTTGAGAAGGTAAAAGATGTTGTGGAACTGTGTGAGGATCAGACCAGCAAAAGGAAGTACCTTATAGCCAATTATCGCAGTTAAGCCTTCTGTTGTCCAAATGTCAGTCACTTCAGTTATTTAGATGGACAAGTATGCTCCAGAAACACTCCTTCCATGCCACTGTACGCCCCATCCGAATTCAGTGTTCTGAAGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGGTAATTCCTCATGGTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGTTCAGTAACATCAGTATTCTAGATTTGGTTTCCTTACTAAGAATGTTCAAGCACTGGGCCGGCGTTTGTTTTTTAATCATGTCGGTTCCGTAAGTGTGGGAGCACAGAAAATGCTTGTAATAATTTATCATTATGCTAATCTACACAGATAGATGGTTGTTGATCTTTGCAGAAAGATAGCTGTGAAAGAAACCAATGTTAACCATTTGCCAGTTACCTGGTAGTTGCATAGAGCAAAATCTGAACT] [+] EMBL AK107589 [CACCAACGACACCGCCCTCCGCTCGCCGCCGGCGACCAACGCCGGTGATCTCTCCCCCCGCCCGCCCGCCCGTCCACACCGGCCGGAGCATCCGATCGACCGGCCTCCCCCCCGCCCCAGACACCATCGCCTTCCCACCGCTGCCGCTCGTCCCGTCTCACCGATCCCTCCATCCTTGGTCGAATCAATCGGAGATAACATGTCTTTTGAAGATAAAGCAATGGCTAGCCGTGTCGCTTCACCCTCACCAAAATCTATGGCTTCAGAATCAGACCCAAGCATGATGTTAGCTATCACTTCGAATATGGAGCATTCTCAAGCAAATAACCAGTCAGTTTCAGTTCTTGGTCCAGTGGCTATCTTTTGGGATATTGAGAACTGCCCTGTTCCAAGTGATGTACGACCAGAAGATGTTGCTGGAAATGTCCGGATGGCATTACGGCTACATCCTGTTGTTAAGGGTGCTGTGACAATGCTCTCTGCATACGGTGATTTCAATGCCTCCCCAAGAAGACTCAGAGAGGGATGTCAAAGAACTGGAGTCAAACTTGTTGATGTTCCAAATGGAAGGAAAGATGCTGCTGATAAGGCTACACTGGTTGATATGTTTCTATTTGCATTGGACAATCGTCCACCATCATCCATTATGCTTATATCCGGTGACGTGGACTTTGCTCCTGCATTGCATATACTTGGTCAGCGTGGATACACTATTGTCCTGGCCATTCCATCCTCAGTTACTGTATCTTCAGCATTGAGCAGTGCTGGGAGTTTCGTCTGGGACTGGCCTAGTCTTGCTCGTGGTGAAGGTATTGTGGCCCCTAGATCCATAGGGCGCCGCTTTGCCGATCCTCCAGGATATCAACATGGTGGGAATTTTGGGTCGTTCCCTGACACGCAGAATGAAGAGGAGGCCATTGTCTACATGGGAACTTCAAGAAATGAATGCAGTGGTAGAACTACCAGCAACCAGATATATTGCTATAACTCTTCTCAAACCACTAGAGAACCATCCAAAGCTTTCTATACAGTTACAGATGGGAACTGTGGCACATCATCAAGGTCACATAATTTAGCATGTAGTTTGAATGAAGGTCCAGATGTAGACCAGGGTTTGCCAGATGAGCGGTCATGGTGGGTTCGTCCTGGTGATCTTCAAGGTTTGAAGGGCCAATTGTTGCGGTTGTTTGAGTTATCAGGTGGATCTGTTCCACTTGTCCGTGTTCCTTCAGAATATCTAAAACTCTTTGGAAGACACCTCTATGTATCAGAATATGGAGCTGTTAAACTTATTCATCTCTTTGAAAAGCTTGCTGACTCTTTTGTGGTCATAGGGAAGGGTCATAGAAAGGTGATTTGCCTTCGAAATTCTGGTGATAGTAACCTGAAGAAATATTCAACCACACCAATTATTTTGAAAAAGGAAAATAGAGGTGGTTCTATTCTTGATGAAAGCACTATAGGAACAGGTCAGCAGTTGGGCAGCTCATCAGATGATTTCTCAGAGGATGAACGGAACATTAACCCAGATGTAGATGGAGCATATGCCTTCGATAGCCATCTAGACAATTTCAGACAGGAGATTCAGGAGCTTCTTGTCTGTTACTCTTGCCCTGTTCCACTGGGTAATTTCAAGTCTCTCTATGAACAACGGTACAAGAAGACTCTTATCTATGAGAGCTTTGGTGTCGATGGTCTGGAGGAGCTAGTTGAGAAGGTAAAAGATGTTGTGGAACTGTGTGAGGATCAGACCAGCAAAAGGAAGTACCTTATAGCCAATTATCGCAGTTAAGCCTTCTGTTGTCCAAATGTCAGTCACTTCAGTTATTTAGATGGACAAGTATGCTCCAGAAACACTCCTTCCATGCCACTGTACGCCCCATCCGAATTCAGTGTTCTGAAGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGGTAATTCCTCATGGTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGTTCAGTAACATCAGTATTCTAGATTTGGTTTCCTTACTAAGAATGTTCAAGCACTGGGCCGGCGTTTGTTTTTTAATCATGTCGGTTCCGTAAGTGTGGGAGCACAGAAAATGCTTGTAATAATTTATCATTATGCTAATCTACACAGATAGATGGTTGTTGATCTTTGCAGAAAGATAGCTGTGAAAGAAACCAATGTTAACCATTTGCCAGTTACCTGGTAGTTGCATAGAGCAAAATCTGAACT] consensusID : consensus_6732#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 424 fasta sequence [CCGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTTGGTACCAGGTGTTCTCCACAGGAGTCTCCACCCTTGATCTTCTATAAACTAATTTATGCAGACATATTTGTGTGCATACTTTCCCAGACAT-TTTCTAATGTGCGTGCTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAAAATAATGCACTAGGCAATCTCACTTTTGCAGCTAGTATTATATCTCTGTATTTCTGGAGCATACTTGTCCATATTCCATAAACAGTTGGATTGTCTTGACCTGTGCGTGTTGTCAAATTTTCATTGATTGTACAATCTTTAAATTAAAAA] [+] EMBL BM418762 [CCGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTTGGTACCAGGTGTTCTCCACAGGAGTCTCCACCCTTGATCTTCTATAAACTAATTTATGCAGACATATTTGTGTGCATACTTTCCCAGACAT TTTCTAATGTGCGTGCTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAAAA ] [+] EMBL BM419957 [CCGGTGTTGAGAAGGTAAAAGATGTTGTGGAATGACGAAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTTGGTA CAGGTGTTCTCCACAGGAGTCTCCACCCTTGATCTTCTATAAACTAATTTA CCAGACATATTGGTGTGCATACTTTCCCAGACAT TTTCTAATGTGCGT CTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAAAA ] [+] EMBL BI813469 [ TGCAGACATATTTGTGTGCATACTTTCCCAGACATGTTTCTAATGTGCGTGCTTTCTTGTCATAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAATAGAAATCTAATGCACTAGGCAATCTCACTTTTGCAGCTAGTATTATATCTCTGTATTTCTGGAGCATACTTGTCCATATTCCATAAACAGTTGGATTGTCTTGACCTGTGCGTGTTGTCAAATTTTCATTGATTGTACAATCTTTAAATTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6732#0 CACCAACGACACCGCCCTCCGCTCGCCGCCGGCGACCAACGCCGGTGATCTCTCCCCCCG 60 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CCCGCCCGCCCGTCCACACCGGCCGGAGCATCCGATCGACCGGCCTCCCCCCCGCCCCAG 120 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 ACACCATCGCCTTCCCACCGCTGCCGCTCGTCCCGTCTCACCGATCCCTCCATCCTTGGT 180 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CGAATCAATCGGAGATAACATGTCTTTTGAAGATAAAGCAATGGCTAGCCGTGTCGCTTC 240 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 ACCCTCACCAAAATCTATGGCTTCAGAATCAGACCCAAGCATGATGTTAGCTATCACTTC 300 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 GAATATGGAGCATTCTCAAGCAAATAACCAGTCAGTTTCAGTTCTTGGTCCAGTGGCTAT 360 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTTTTGGGATATTGAGAACTGCCCTGTTCCAAGTGATGTACGACCAGAAGATGTTGCTGG 420 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 AAATGTCCGGATGGCATTACGGCTACATCCTGTTGTTAAGGGTGCTGTGACAATGCTCTC 480 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TGCATACGGTGATTTCAATGCCTCCCCAAGAAGACTCAGAGAGGGATGTCAAAGAACTGG 540 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 AGTCAAACTTGTTGATGTTCCAAATGGAAGGAAAGATGCTGCTGATAAGGCTACACTGGT 600 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TGATATGTTTCTATTTGCATTGGACAATCGTCCACCATCATCCATTATGCTTATATCCGG 660 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TGACGTGGACTTTGCTCCTGCATTGCATATACTTGGTCAGCGTGGATACACTATTGTCCT 720 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 GGCCATTCCATCCTCAGTTACTGTATCTTCAGCATTGAGCAGTGCTGGGAGTTTCGTCTG 780 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 GGACTGGCCTAGTCTTGCTCGTGGTGAAGGTATTGTGGCCCCTAGATCCATAGGGCGCCG 840 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTTTGCCGATCCTCCAGGATATCAACATGGTGGGAATTTTGGGTCGTTCCCTGACACGCA 900 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 GAATGAAGAGGAGGCCATTGTCTACATGGGAACTTCAAGAAATGAATGCAGTGGTAGAAC 960 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TACCAGCAACCAGATATATTGCTATAACTCTTCTCAAACCACTAGAGAACCATCCAAAGC 1020 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TTTCTATACAGTTACAGATGGGAACTGTGGCACATCATCAAGGTCACATAATTTAGCATG 1080 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TAGTTTGAATGAAGGTCCAGATGTAGACCAGGGTTTGCCAGATGAGCGGTCATGGTGGGT 1140 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TCGTCCTGGTGATCTTCAAGGTTTGAAGGGCCAATTGTTGCGGTTGTTTGAGTTATCAGG 1200 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TGGATCTGTTCCACTTGTCCGTGTTCCTTCAGAATATCTAAAACTCTTTGGAAGACACCT 1260 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTATGTATCAGAATATGGAGCTGTTAAACTTATTCATCTCTTTGAAAAGCTTGCTGACTC 1320 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TTTTGTGGTCATAGGGAAGGGTCATAGAAAGGTGATTTGCCTTCGAAATTCTGGTGATAG 1380 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TAACCTGAAGAAATATTCAACCACACCAATTATTTTGAAAAAGGAAAATAGAGGTGGTTC 1440 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TATTCTTGATGAAAGCACTATAGGAACAGGTCAGCAGTTGGGCAGCTCATCAGATGATTT 1500 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTCAGAGGATGAACGGAACATTAACCCAGATGTAGATGGAGCATATGCCTTCGATAGCCA 1560 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 TCTAGACAATTTCAGACAGGAGATTCAGGAGCTTCTTGTCTGTTACTCTTGCCCTGTTCC 1620 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 ACTGGGTAATTTCAAGTCTCTCTATGAACAACGGTACAAGAAGACTCTTATCTATGAGAG 1680 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTTTGGTGTCGATGGTCTGGAGGAGCTAGTTGAGAAGGTAAAAGATGTTGTGGAACTGTG 1740 consensus_6732#1 ----------------------CCGGT-GTTGAGAAGGTAAAAGATGTTGTGGAATGACG 37 * * *************************** * consensus_6732#0 TGAGG-ATCAGACCAGCAAAAG------GAAGTACCTTATAGCCAATTATCGCAG----T 1789 consensus_6732#1 AAAGGGATCAAGCCAGCAAAAGTTATATGAATTGGGTGTTCTTCAGTCTCCACAGGAGTT 97 *** **** ********** *** * * * ** * * *** * consensus_6732#0 TAAGCCTTCTGTTGTCCAAATGTCAGTCACTTCAGTTA--TTTAGATGGACAAGTATGCT 1847 consensus_6732#1 GGTACCAGGTGTTCTCCACAGG--AGTCTCCACCCTTGATCTTCTATAAACTAATTTA-T 154 ** **** **** * * **** * * ** ** ** ** * * * * consensus_6732#0 CCAGAAACACTCCT-TCCATGCCACTGTACGCCCCATCCGAATTCAGTGTTCTGAAGGTG 1906 consensus_6732#1 GCAGACATATTTGTGTGCATACTTTCCCAGACATTTTCTAATGTGCGTGCTTTCTTGTCA 214 **** * * * * * *** * * * ** * * *** * * * consensus_6732#0 TTGAGAAGGTAAAAGAT----GTTGTGGAATGACGAAAGGGAT-CAAGCCAGCAAAAGGT 1961 consensus_6732#1 TAAAGTAAAAGAAACATCATTATTCTTTACATATGAATTGGATATGTGATATAAAAAAAA 274 * ** * *** ** ** * * * *** **** * * **** consensus_6732#0 AATTCCTCATGGTTCACTACATCAGTAATTTAGGGCTTCTGTTGTCCAAATGTCAGTAGT 2021 consensus_6732#1 AATAATGCAC--TAGGCAATCTCACT--TTTGCAGCTAGTATTAT----ATCTCTGTATT 326 *** ** * * * *** * *** *** * ** * ** ** *** * consensus_6732#0 TCAGTAACATCAGTATTCTAGATTTGGTTTCCTTACTAAGAATGTTCAAGCACTGGGCCG 2081 consensus_6732#1 TCTGGAGCAT-ACTTGTCCATATTCCATAAAC--AGTTGGATTGT-------CTTGACCT 376 ** * * *** * * ** * *** * * * * ** *** ** * ** consensus_6732#0 GCGTTTGTTTTTTAATCAT-GTCGGTTCCGTAAGTGTGGGAGCACAGAAAATGCTTGTAA 2140 consensus_6732#1 GTGCGTGTTGTCAAATTTTCATTGATTGTACAATCTTTAAATTAAAAA------------ 424 * * **** * *** * * * ** ** * * * * * consensus_6732#0 TAATTTATCATTATGCTAATCTACACAGATAGATGGTTGTTGATCTTTGCAGAAAGATAG 2200 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTGTGAAAGAAACCAATGTTAACCATTTGCCAGTTACCTGGTAGTTGCATAGAGCAAAAT 2260 consensus_6732#1 ------------------------------------------------------------ consensus_6732#0 CTGAACT 2267 consensus_6732#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||