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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6734 cluster # 6734       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6734#0 length = 541 sequences # 2  
consensus_6734#1 length = 227 sequences # 2  

consensusID : consensus_6734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 541
fasta sequence
                              [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAAA]

[+] EMBL CA999855             [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAAA]
[+] EMBL CA999854             [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCT                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_6734#0 CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCG CCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACC GGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGT TCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCA GAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATG TAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCA GCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTC TTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCT TGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAA A



consensusID : consensus_6734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 227
fasta sequence
                              [ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG]

[-] EMBL CF315131             [ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA                         ]
[+] EMBL CF315132             [ TGGACTGAAGGAGTAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCGTATTAGTTTGAATAAGAACTGTTAGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG]


>consensus_6734#1 ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTT TTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATAT TTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6734#0      CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCG 60
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      CCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACC 120
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGT 180
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCA 240
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      GAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATG 300
consensus_6734#1      ------------------------------------------------------------
                                                                                  

consensus_6734#0      TAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCA 360
consensus_6734#1      ----------------------------------------------------------AT 2
                                                                                  

consensus_6734#0      GCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTC 420
consensus_6734#1      GGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTT 62
                      *  *  ****** **** * ** ********* ******** * ******** ****** 

consensus_6734#0      TTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCT 480
consensus_6734#1      TTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTT 122
                      ***************** **************************************** *

consensus_6734#0      TGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAA 540
consensus_6734#1      TGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAA 182
                      **************  **************************** **        *****

consensus_6734#0      A-------------------------------------------- 541
consensus_6734#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG 227
                      *                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)