These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAAA] [+] EMBL CA999855 [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAAA] [+] EMBL CA999854 [CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGTTCT ] consensusID : consensus_6734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 227 fasta sequence [ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG] [-] EMBL CF315131 [ATGGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTTTTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTTTGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF315132 [ TGGACTGAAGGAGTAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCTTGTGAACAACTGGTCGTATTAGTTTGAATAAGAACTGTTAGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6734#0 CTAAGGCTGGATGGTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCG 60 consensus_6734#1 ------------------------------------------------------------ consensus_6734#0 CCCTCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACC 120 consensus_6734#1 ------------------------------------------------------------ consensus_6734#0 GGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAATGAAGAGT 180 consensus_6734#1 ------------------------------------------------------------ consensus_6734#0 TCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCA 240 consensus_6734#1 ------------------------------------------------------------ consensus_6734#0 GAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATG 300 consensus_6734#1 ------------------------------------------------------------ consensus_6734#0 TAGTCTGCTTTTGATAGGGTAGAACAGAAAGTTGAGCTGACAAAATGAGCAATTTTACCA 360 consensus_6734#1 ----------------------------------------------------------AT 2 consensus_6734#0 GCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTCGTTTTTC 420 consensus_6734#1 GGGGTGAAGGAGTAACTTTTTTTTAGCTGTCCCCTTGTACAAAAAAACGATTTGTTTTTT 62 * * ****** **** * ** ********* ******** * ******** ****** consensus_6734#0 TTTTCATCAGCTTCAACACCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATCT 480 consensus_6734#1 TTTTCATCAGCTTCAACCCCGAGGATGTTTGATTTTGCTGTAAGCAATTAATTAATATTT 122 ***************** **************************************** * consensus_6734#0 TGTGAACAACTGGTCATATTAGTTTGAATAAGAACTGTTAGTTATAATTTTTTTTAAAAA 540 consensus_6734#1 TGTGAACAACTGGTGGTATTAGTTTGAATAAGAACTGTTAGTTAAAAAAAAAAAAAAAAA 182 ************** **************************** ** ***** consensus_6734#0 A-------------------------------------------- 541 consensus_6734#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG 227 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||