These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6738#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 570 fasta sequence [ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTG-ATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCTCATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAAAANNACNNNNNNAAAAAAANNAAAGCAAAAAACAAA] [+] EMBL CA757763 [ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCATGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTGAATCAGCGGGTGGTTGGTGATGATGGTTANTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCTCATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAAAANNACNNNNNNAAAAAAANNAAAGCAAAAAACAAA] [+] EMBL AK062922 [ AGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTG ATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTC ] [+] EMBL AU091683 [ TGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTCTTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTTATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGTTGTCAGTCCGCATTTCTTCTGGTG ATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGATCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGGAAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCATGCAGCTCAaaaaaaa ] consensusID : consensus_6738#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCCTTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT] [+] EMBL CA757772 [ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCGCTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTTCCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCCTTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6738#0 ------ACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCG 54 consensus_6738#1 ACCCCGACGACCGACAACTCCGGCGCCACGACGACCGCGCGCGCGGCCGGCGTCGCCGCG 60 ****************************************************** consensus_6738#0 CTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTT 114 consensus_6738#1 CTCGTGGCATTGGCGGGCGCCATCTTGCTTTGAGCCTTCGAGTAGTGTCGCTGTTGCTTT 120 ************************************************************ consensus_6738#0 CCTTCCTCCTGTACCACAGCTAGCTGTGCGCGGCGGCACGGCCACGCTTCAGCTCGCTTC 174 consensus_6738#1 CCTTCCTCCTGTACCACAGCTAGCTGTGCACGGCGGAACAGACACGCTACAACTCGCTCC 180 ***************************** ****** ** * ****** ** ****** * consensus_6738#0 TTTCTTTAATTTTTTTTCTTCTTCTTCTTTGTTTTTAAATTTTTTTCTTTCGTGTTTGTT 234 consensus_6738#1 TTTCTTTAATACTTAACCGTCGTCTTCGTTGTGATAAAATTTTATACTTTCATGTT---- 236 ********** ** * ** ***** **** * ******* * ***** **** consensus_6738#0 ATTTAAATTTTTACCGGTGGTATGATCGATCGATCGATTCTTGATGTACGATGCATTGGT 294 consensus_6738#1 ------------------------------------------------------------ consensus_6738#0 TGTCAGTCCGCATTTCTTCTGGTGATCAGCGGGTGGTTGGTGATGATGGTTAGTGAAAGA 354 consensus_6738#1 ------------------------------------------------------------ consensus_6738#0 TCTCTTGGTGTCAGCTCGCTATGTACGTTAATTACTACTTTTTTTTGGTTCTATAGAGGG 414 consensus_6738#1 ------------------------------------------------------------ consensus_6738#0 AAGATTTGTGTATATTTTTGGTGTATCATTTTCGGTGGCAGTTGAATAAAAAATCTCCAT 474 consensus_6738#1 ------------------------------------------------------------ consensus_6738#0 GCAGCTCATCTACTGCGCTCCATGCTCAATTACTAATTACTGTCNTNNNAAANAAAAAAA 534 consensus_6738#1 ------------------------------------------------------------ consensus_6738#0 AANNACNNNNNNAAAAAAANNAAAGCAAAAAACAAA 570 consensus_6738#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||