These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6743#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1796 fasta sequence [TTCCTCCTCTCCTCTTCGTGTCTTGCCCTCCGGCATCAGCGGCGGCGGAGTGGCGGGGTTGCGGCATTGGGAGCTGACGTGGCCGCCGGAGGAGGAGCAAGGCGCGCGGCGCCGCCGGCCATGTGGTGATCTGGGGGGGCTTGATCCCGCCGGAGTGGTTCTTGGGCTGAGAGTGCGGCGCCCATGAACGGAGCAAGCTCCGGCGGCGGCGGCGGCGCCGGTGCCGGCGGGGATGGGCCGTTGGTGTACCAGCGCTGGAAAGGGAACAATGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGTTCGTTGCCAAAGAACTGATGAATAACTTTTCTTATGGTCTGGGATTACCAGTAATGATTTCAGCAGTTGTGTTCACGGCATATGACTTGAGCCTTCTACTTCTCACTTCTGGTAGGGATCCAGGTATAATACCTCGGAATGCACACCCTCCAGAACCTGAAGGTTTGGATGGCAATGCAGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGATGTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTCTTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGCTGGGTATACATTGTTAAGATCAGAAGCTCTGAGCAGATAACAATATGGAAGGCTATGGCAAAGACCCCTGCTTCTATTGCTCTGCTAGTCTACACATTTATTGCCGTTTGGTTTGTTGGTGGCCTCTCTGTATTTCACTTGTATCTCATGAGCACCAACCAGACAACATATGAGAACTTCAGGTATCGGTATGATCAACGGGCCAACCCATACAACAGGGGAGTCATGGAGAACATTAAAGATATATTCTTCTCTGCAATTCCTGCCTCCAAGAACAACTTCCGCGCCAGAGTCCCAGTTCCACAGGAGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATTGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGATATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGATGGCAGGTTTCGCAGTGCATCTCCAGATCTAAGCCGTGACGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGTACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTTTAGTTGCCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGGTGGTTGTTTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGT--TGTGAGGTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTAGAGCACTGAACTT-AAAGGGATTGTTTTACTTGGCTTTGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACGCCACTCACTTGAG] [+] EMBL AK103046 [TTCCTCCTCTCCTCTTCGTGTCTTGCCCTCCGGCATCAGCGGCGGCGGAGTGGCGGGGTTGCGGCATTGGGAGCTGACGTGGCCGCCGGAGGAGGAGCAAGGCGCGCGGCGCCGCCGGCCATGTGGTGATCTGGGGGGGCTTGATCCCGCCGGAGTGGTTCTTGGGCTGAGAGTGCGGCGCCCATGAACGGAGCAAGCTCCGGCGGCGGCGGCGGCGCCGGTGCCGGCGGGGATGGGCCGTTGGTGTACCAGCGCTGGAAAGGGAACAATGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGTTCGTTGCCAAAGAACTGATGAATAACTTTTCTTATGGTCTGGGATTACCAGTAATGATTTCAGCAGTTGTGTTCACGGCATATGACTTGAGCCTTCTACTTCTCACTTCTGGTAGGGATCCAGGTATAATACCTCGGAATGCACACCCTCCAGAACCTGAAGGTTTGGATGGCAATGCAGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGATGTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTCTTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGCTGGGTATACATTGTTAAGATCAGAAGCTCTGAGCAGATAACAATATGGAAGGCTATGGCAAAGACCCCTGCTTCTATTGCTCTGCTAGTCTACACATTTATTGCCGTTTGGTTTGTTGGTGGCCTCTCTGTATTTCACTTGTATCTCATGAGCACCAACCAGACAACATATGAGAACTTCAGGTATCGGTATGATCAACGGGCCAACCCATACAACAGGGGAGTCATGGAGAACATTAAAGATATATTCTTCTCTGCAATTCCTGCCTCCAAGAACAACTTCCGCGCCAGAGTCCCAGTTCCACAGGAGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATTGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGATATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGATGGCAGGTTTCGCAGTGCATCTCCAGATCTAAGCCGTGACGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGTACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTTTAGTTGCCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGGTGGTTGTTTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGT TGTGAGGTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTAGAGCACTGAACTT AAAGGGATTGTTTTACTTGGCTTTGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACGCCACTCACTTGAG] [+] EMBL AI978504 [ AGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGATGTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGGCCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCACTGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTCTTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGTTGGGTATACATTGTTAAGATCAGAAACTCTGAGCAGGTAACAATATGGAAGGCTATGGCAAAGNCCCCTGCNTCTATTGCTCTGCNAGTCTACACGTTTATTNNNNNNTGGTTTGTTG ] [-] EMBL AI978503 [ TGACAATGTCTAANNNNNCATGTATGCAGTTATAGTNNNAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTGGAGCACTGAACTTAAAAGGGATTGTTTTACTTGGCTTTGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACACCACTCAC ] consensusID : consensus_6743#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AGGACGAGACAAGGGGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATCGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGAGATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGACAGCAGGTTTCGGAATGCATCTCCAGATTTAAGCCGTGATGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGCACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTCTAATTGGCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTTTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGTTCTAAAAAAAAAAAAAAAA] [-] EMBL CA760244 [AGGACGAGACAAGGGGCAAGGTCTGAGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATCGAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGAGATCGGCGATCTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGACAGCAGGTTTCGGAATGCATCTCCAGATTTAAGCCGTGATGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGCACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTCTAATTGGCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATTTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTTTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGTTCTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6743#0 TTCCTCCTCTCCTCTTCGTGTCTTGCCCTCCGGCATCAGCGGCGGCGGAGTGGCGGGGTT 60 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GCGGCATTGGGAGCTGACGTGGCCGCCGGAGGAGGAGCAAGGCGCGCGGCGCCGCCGGCC 120 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 ATGTGGTGATCTGGGGGGGCTTGATCCCGCCGGAGTGGTTCTTGGGCTGAGAGTGCGGCG 180 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 CCCATGAACGGAGCAAGCTCCGGCGGCGGCGGCGGCGCCGGTGCCGGCGGGGATGGGCCG 240 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 TTGGTGTACCAGCGCTGGAAAGGGAACAATGTGTTTGTTCTTCAGGGGAGGTTTATATTT 300 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GGACCCGATGCAAGATCCTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATC 360 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 TTTTGTTTGTTCGTTGCCAAAGAACTGATGAATAACTTTTCTTATGGTCTGGGATTACCA 420 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GTAATGATTTCAGCAGTTGTGTTCACGGCATATGACTTGAGCCTTCTACTTCTCACTTCT 480 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GGTAGGGATCCAGGTATAATACCTCGGAATGCACACCCTCCAGAACCTGAAGGTTTGGAT 540 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GGCAATGCAGAGGTTGGATCTAACCAGACTCCACCAATGCGTTTGCCCCGAGTGAAGGAT 600 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GTTGTTGTCAATGGAATCACTGTGAAGACAAAATACTGTGATACCTGCATGCTGTACCGG 660 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 CCTCCTCGTTGCTCCCATTGCTCTATCTGCAACAACTGCGTTGAACGTTTTGACCATCAC 720 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 TGCCCATGGGTTGGGCAATGCATAGGACTTAGGAATTACAGGTTCTTTTATATGTTTGTC 780 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 TTCTCAACAACTCTGCTCTGCCTCTACGTCTTTGGGTTCTGCTGGGTATACATTGTTAAG 840 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 ATCAGAAGCTCTGAGCAGATAACAATATGGAAGGCTATGGCAAAGACCCCTGCTTCTATT 900 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 GCTCTGCTAGTCTACACATTTATTGCCGTTTGGTTTGTTGGTGGCCTCTCTGTATTTCAC 960 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 TTGTATCTCATGAGCACCAACCAGACAACATATGAGAACTTCAGGTATCGGTATGATCAA 1020 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 CGGGCCAACCCATACAACAGGGGAGTCATGGAGAACATTAAAGATATATTCTTCTCTGCA 1080 consensus_6743#1 ------------------------------------------------------------ consensus_6743#0 ATTCCTGCCTCCAAGAACAACTTCCGCGCCAGAGTCCCAGTTCCACAGGAGCAAGGTCTG 1140 consensus_6743#1 --------------------------------AGGACGAGAC---AAGGGGCAAGGTCTG 25 ** * ** *** ********** consensus_6743#0 AGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATT 1200 consensus_6743#1 AGGCCTCGCCCAACCAATGGTTTCATGAGTCCAAACATGGGGAGAGCCGTCGGTGACATC 85 *********************************************************** consensus_6743#0 GAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGATATCGGCGAT 1260 consensus_6743#1 GAGATGGGTAGAAAGCCGGTGGCATGGGATGAGCCAAGGATGGCAGCCGAGATCGGCGAT 145 ************************************************** ********* consensus_6743#0 CTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGATGGCAGGTTTCGCAGTGCATCT 1320 consensus_6743#1 CTGGGAGCAGGCCTGGGCAACTTGTTGGAGGACAAGGACAGCAGGTTTCGGAATGCATCT 205 ************************************** ********** * ******* consensus_6743#0 CCAGATCTAAGCCGTGACGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTG 1380 consensus_6743#1 CCAGATTTAAGCCGTGATGCCCTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTG 265 ****** ********** ****************************************** consensus_6743#0 ATGAACCCAGGGCGTACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTTTAGTT 1440 consensus_6743#1 ATGAACCCAGGGCGCACAAGCTGGGGAGTTGAGGCAGGTCGATGATGACAATGTCTAATT 325 ************** *************************************** ** ** consensus_6743#0 GCCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAAT 1500 consensus_6743#1 GGCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAAT 385 * ********************************************************** consensus_6743#0 TTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGGTGGT 1560 consensus_6743#1 TTGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTTTTAGGCCTATGACCTTGGCTGGT 445 ************************************ ****************** **** consensus_6743#0 TGTTTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATT 1620 consensus_6743#1 TGATTTCACATTTCCATTTCTCCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATT 505 ** ********************************************************* consensus_6743#0 TCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTG--AGGTATCCAGATTAGTTCAGT 1678 consensus_6743#1 TCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAGGTATCCAGATTAGTTCAGT 565 ************************************* ********************* consensus_6743#0 TCTAATTGTGTATGTATATAGCTAGAGCACTGAACTTAAAGGGATTGTTTTACTTGGCTT 1738 consensus_6743#1 TCTAAAAAAAAAAAAAAAA----------------------------------------- 584 ***** * * * consensus_6743#0 TGATGAATGATTGTGAACAAGATTGTATTTTGCAGTGGACAAACGCCACTCACTTGAG 1796 consensus_6743#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||