These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 998 fasta sequence [CAACGTCGCCATGGGTCGTGTCATTCGCAACCAGAGAAAGGGTCGCGGCTCGATCTTCACGGCCAACACCCGCCTGAACAAGGCCCCTGCCCAGTTCCGCACCTACGACTTCTCGGAGCGTAATGGCTACATTCGGGGTGTCGTAAAGGAGATTGTTCACGACTCCGGTCGTGGCGCTCCTCTCGCCAGGGTCACCTTCCGCAACCCCTACAAGTTCAAGCACAACACCGAGACCTTCATCGCCAACGAGGGCATGTACACTGGCCAGTTCATCTACGCCGGAAAGAACGCTGCTCTCACCATCGGCAACGTCTTGCCCCTCGCCTCCGTCCCTGAGGGTACCGTCCTCACCAACGTCGAGGACAAGTCCGGTGACCGTGGTGCGCTCGGCCGTACCTCTGGTAACTACGTTACCGTCATCGGCCACAACCCCGACGAGGGCAAGACCCGTGTCAAGCTCCCATCCGGTGCCAAGAAGGTCCTTCCCAGCTCATGCCGTGGTATGGTTGGTATCGTCGCTGGAGGTGGCCGCACAGACAAGCCTCTCATGAAGGCGTCGCGCGCCAAGCACAAGTTCGCTGCCAAGCGCAACAGCTGGCCCAGGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAGCATATCGGTAAAGCCTCGACCATCTCGCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTCATTGCCGCGAGGAGGACAGGTCTGCTCCGTGGTACCCAGAAGACCAAGGACTAAAGTGGTGCATGATACGGTGGCGTCAAAATGGGTCAATGACAACGATGCAAACGGTTATTCTCTCCATACTACCTACTCTCTGTGCGGGTGGCCGGGCGTTATAACAACACTTCTCGGCAGGCTGTGCTTTACATGGCTTGCGTGCATGATAGGTTCTTAGGGAATGTGATTCCGAAAAATGCATCTGGGCTGTACTTTTGGCAATGTGAAATGATACCATTAC] [+] EMBL AK108169 [CAACGTCGCCATGGGTCGTGTCATTCGCAACCAGAGAAAGGGTCGCGGCTCGATCTTCACGGCCAACACCCGCCTGAACAAGGCCCCTGCCCAGTTCCGCACCTACGACTTCTCGGAGCGTAATGGCTACATTCGGGGTGTCGTAAAGGAGATTGTTCACGACTCCGGTCGTGGCGCTCCTCTCGCCAGGGTCACCTTCCGCAACCCCTACAAGTTCAAGCACAACACCGAGACCTTCATCGCCAACGAGGGCATGTACACTGGCCAGTTCATCTACGCCGGAAAGAACGCTGCTCTCACCATCGGCAACGTCTTGCCCCTCGCCTCCGTCCCTGAGGGTACCGTCCTCACCAACGTCGAGGACAAGTCCGGTGACCGTGGTGCGCTCGGCCGTACCTCTGGTAACTACGTTACCGTCATCGGCCACAACCCCGACGAGGGCAAGACCCGTGTCAAGCTCCCATCCGGTGCCAAGAAGGTCCTTCCCAGCTCATGCCGTGGTATGGTTGGTATCGTCGCTGGAGGTGGCCGCACAGACAAGCCTCTCATGAAGGCGTCGCGCGCCAAGCACAAGTTCGCTGCCAAGCGCAACAGCTGGCCCAGGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAGCATATCGGTAAAGCCTCGACCATCTCGCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTCATTGCCGCGAGGAGGACAGGTCTGCTCCGTGGTACCCAGAAGACCAAGGACTAAAGTGGTGCATGATACGGTGGCGTCAAAATGGGTCAATGACAACGATGCAAACGGTTATTCTCTCCATACTACCTACTCTCTGTGCGGGTGGCCGGGCGTTATAACAACACTTCTCGGCAGGCTGTGCTTTACATGGCTTGCGTGCATGATAGGTTCTTAGGGAATGTGATTCCGAAAAATGCATCTGGGCTGTACTTTTGGCAATGTGAAATGATACCATTAC] consensusID : consensus_6748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 927 fasta sequence [AAGCGGCCCAAGCCAGAACTCCTATTCACGATGGGTAGAGTCATTCGCAACCAGCGTAAGGGTCGTGGATCCATCTTCACGGCCAACACGCGCCTGAACAAGGCCCCTGCTAAGTTCAGAAACCTCGATTATGCCGAGCGCCACGGCTACCTTCGAGGTGTCGTCCGCGAGATCGTCCACGATGCTGGTCGCGGTGCCCCCCTCGCCAAGGTCGTCTTCCGTCACCCCTACCGATTCAAGCAGGTCACCGAGACTTTCATCGCCAACGAAGGCATGTACACCGGCCAATTCATCTACGCCGGAAAGAAGGCTGCCCTGACTGTCGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAGGAAGGTCGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCCTGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAACATATTGGTAAGGCTTCTACCATCTCCCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTTATCGCCGCCCGCAGAACGGGTCTTCTCCGTGGTACCCAGAAGACAAAGGAGTAAAGTGGTGGCTGGGTTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCAAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATT] [+] EMBL AK108964 [AAGCGGCCCAAGCCAGAACTCCTATTCACGATGGGTAGAGTCATTCGCAACCAGCGTAAGGGTCGTGGATCCATCTTCACGGCCAACACGCGCCTGAACAAGGCCCCTGCTAAGTTCAGAAACCTCGATTATGCCGAGCGCCACGGCTACCTTCGAGGTGTCGTCCGCGAGATCGTCCACGATGCTGGTCGCGGTGCCCCCCTCGCCAAGGTCGTCTTCCGTCACCCCTACCGATTCAAGCAGGTCACCGAGACTTTCATCGCCAACGAAGGCATGTACACCGGCCAATTCATCTACGCCGGAAAGAAGGCTGCCCTGACTGTCGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAGGAAGGTCGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCCTGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAACATATTGGTAAGGCTTCTACCATCTCCCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTTATCGCCGCCCGCAGAACGGGTCTTCTCCGTGGTACCCAGAAGACAAAGGAGTAAAGTGGTGGCTGGGTTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCAAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATT] consensusID : consensus_6748#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [GGCCCCTGCTAAGTTCAGGAGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTGCCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGATTCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCTACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCGAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCGTTTCTCTGTGAAAAAAA] [-] EMBL CA763691 [GGCCCCTGCTAAGTTCAGGAGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTGCCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGATTCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCTACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCGAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCGTTTCTCTGTGAAAAAAA] [-] EMBL CA763690 [GGCCCCTGCTAAGTTCAGGAGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTGCCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGATTCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCTACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCGAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCGTTTCTCTGTGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6748#1 AAGCGGCCCAAGCCAGAACTCCTATTCACGATGGGTAGAGTCATTCGCAACCAGCGTAAG 60 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 --------------------CAACGTCGCCATGGGTCGTGTCATTCGCAACCAGAGAAAG 40 consensus_6748#1 GGTCGTGGATCCATCTTCACGGCCAACACGCGCCTGAACAAGGCCCCTGCTAAGTTCAGA 120 consensus_6748#2 -----------------------------------------GGCCCCTGCTAAGTTCAGG 19 consensus_6748#0 GGTCGCGGCTCGATCTTCACGGCCAACACCCGCCTGAACAAGGCCCCTGCCCAGTTCCGC 100 ********* ***** * consensus_6748#1 AACCTCGATTATGCCGAGC-GCCACGGCTACCTTCGAG-GTGTCGTCC-GCGAGATCGT- 176 consensus_6748#2 AGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTG 79 consensus_6748#0 ACCTACGACTTCTCGGAGC-GTAATGGCTACATTCGGG-GTGTCGTAA-AGGAGATTGT- 156 * * ** * * *** * **** * **** * ******* ***** ** consensus_6748#1 CCACGATGCTGGTC-GCGGTGCCCCCCTCGCCAAGGTCGTCTTCCGTCACCCCTACCGAT 235 consensus_6748#2 CCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGAT 139 consensus_6748#0 TCACGACTCCGGTC-GTGGCGCTCCTCTCGCCAGGGTCACCTTCCGCAACCCCTACAAGT 215 * * * **** * ** ** ** ******* *** ****** ***** * * consensus_6748#1 TCAAGCAGGTCACCGAGACTTTCATCGCCAACGAAGGCATGTACACCGGCCAATTCATCT 295 consensus_6748#2 TCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCT 199 consensus_6748#0 TCAAGCACAACACCGAGACCTTCATCGCCAACGAGGGCATGTACACTGGCCAGTTCATCT 275 ******* * ******* ** *********** ********* * **** ******* consensus_6748#1 ACGCCGGAAAGAAGGCTGCCCTGACTGTCGGCAACGTCCTCCCTCTCGGTGAGATGCCCG 355 consensus_6748#2 ACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCG 259 consensus_6748#0 ACGCCGGAAAGAACGCTGCTCTCACCATCGGCAACGTCTTGCCCCTCGCCTCCGTCCCTG 335 ************* ***** ** ** * ********* * ** **** * ** * consensus_6748#1 AGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAA 415 consensus_6748#2 AGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAA 319 consensus_6748#0 AGGGTACCGTCCTCACCAACGTCGAGGACAAGTCCGGTGACCGTGGTGCGCTCGGCCGTA 395 *********** ** ******* ***** *** ************* * ******** * consensus_6748#1 CCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCA 475 consensus_6748#2 CCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCA 379 consensus_6748#0 CCTCTGGTAACTACGTTACCGTCATCGGCCACAACCCCGACGAGGGCAAGACCCGTGTCA 455 **** ** ****** * *** * ************* ** ************** *** consensus_6748#1 AGCTTCCCTCTGGTGCCAGGAAGGTCGTCCACTCCGGTGCCCGAGGAATGATCGGTATCG 535 consensus_6748#2 AGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCG 439 consensus_6748#0 AGCTCCCATCCGGTGCCAAGAAGGTCCTTCCCAGCTCATGCCGTGGTATGGTTGGTATCG 515 **** ** ** ******* ****** * * * * *** ** *** * ******* consensus_6748#1 TCGCTGGCGGTGGCCGAACTGACAAGCCTCTCCTGAAGGCTTCTCGTGCCAAGCACAAGT 595 consensus_6748#2 TCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGT 499 consensus_6748#0 TCGCTGGAGGTGGCCGCACAGACAAGCCTCTCATGAAGGCGTCGCGCGCCAAGCACAAGT 575 ******* ******** ** ************ ******* ** ** ************* consensus_6748#1 TCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCGTGGTGTTGCCATGAACCCCGTCGACC 655 consensus_6748#2 TCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTG-GGATGGTGTTTACT 558 consensus_6748#0 TCGCTGCCAAGCGCAACAGCTGGCCCAGGACTCGTGGTGTTGCCATGAACCCCGTCGACC 635 ****** ****** ************* ***** **** * * * ** ** consensus_6748#1 ATCCCCACGGTGGTGGTAACCACCAACATATTGGTAAGGCTTCTACCATCTCCCGATACG 715 consensus_6748#2 GGCT------TGCTTGCATCTAT-----------TGAAGGTACTGCCGAGAGCAGATGGC 601 consensus_6748#0 ATCCCCACGGTGGTGGTAACCACCAGCATATCGGTAAAGCCTCGACCATCTCGCGATACG 695 * ** * * * * * * * * * ** *** consensus_6748#1 CCGTCCAGGGTCAAAAGGCCGGTCTTATCGCCGCC--CGCAGAACGGGTCTTCTCCGTGG 773 consensus_6748#2 TGGT---AGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCG 658 consensus_6748#0 CCGTCCAGGGTCAAAAGGCCGGTCTCATTGCCGCG--AGGAGGACAGGTCTGCTCCGTGG 753 ** * ** * *** ** ** ** * * * * * * * consensus_6748#1 TACCCAGAAGACAAAGGAGTAAAGTGGTGGCTGGGTTCATGGTCTCATTG-GGATGGTGT 832 consensus_6748#2 TTTCTCTGTGAAAAAAA------------------------------------------- 675 consensus_6748#0 TACCCAGAAGACCAAGGACTAAAGTGGTGCATGATACGGTGGCGTCAAAATGGGTCAATG 813 * * ** ** consensus_6748#1 TTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCAA------GAGCAGATGGCTGGTAG 886 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 ACAACGATGCAAACGGTTATTCTCTCCATACTACCTACTCTCTGTGCGGGTGGCCGGGCG 873 consensus_6748#1 CTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATT------------------- 927 consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 TTATAACAACACTTCTCGGCAGGCTGTGCTTTACATGGCTTGCGTGCATGATAGGTTCTT 933 consensus_6748#1 ------------------------------------------------------------ consensus_6748#2 ------------------------------------------------------------ consensus_6748#0 AGGGAATGTGATTCCGAAAAATGCATCTGGGCTGTACTTTTGGCAATGTGAAATGATACC 993 consensus_6748#1 ----- consensus_6748#2 ----- consensus_6748#0 ATTAC 998 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||