These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 528 fasta sequence [GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATCAAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCGCAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGCGAGGTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA] [+] EMBL BI808723 [GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATCAAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCGCAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGCGAGGTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTCTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCC ATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCCATCACTCATGTCTGGTTCAAAAAA ] [+] EMBL AT003412 [ GTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA] [+] EMBL AT003411 [ GTTGTCTCCGGTTTCGAGGATGTCATCAAGCCCATTGAGGCTNTTGGCTCCAGCAGCGGTACCCCCAAGACCAAGGTCACCATTGTCAACGCTGGTACCGTNTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA] consensusID : consensus_6749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TGANCCAAAGGTTTGGTCCTCCCGGGTTTTCNAAGGAATTGTCCATCCAAAGGCCCCATTTGAGGGCTTCTTGGGCTCCCAACCAAGCGGTACCCCCCCAAGACCCAAAGGTCACCCATTGTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTANAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCAATCACTCATGTCTGGTTCAAAAAAAGAAAAAAAAAA] [+] EMBL AT003586 [TGANCCAAAGGTTTGGTCCTCCCGGGTTTTCNAAGGAATTGTCCATCCAAAGGCCCCATTTGAGGGCTTCTTGGGCTCCCAACCAAGCGGTACCCCCCCAAGACCCAAAGGTCACCCATTGTCAACGCTGGTACCGTCTAAATCGGTCCTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGGTTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGGAGGGTANAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCCAGTAACCTAAAAAGCAATCACTCATGTCTGGTTCAAAAAAAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6749#0 GCACGGCACCGGTGCAAGTCCGTCTACGGCGAGAAGTTTGCCGACGAGAACTTCCAGATC 60 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 AAGCACACCAGGCCTGGACTCCTGTCCATGGCCAACGCCGGCCCCAACACCAACGGCTCG 120 consensus_6749#1 ------------------------------------------------------------ consensus_6749#0 CAGTTCTTCATCACCACTGTCAAGACCTCATGGTTGGACGGCAAGCACGTCGTCTTTGGC 180 consensus_6749#1 ----------------------TGANCCAAAGGTT---TGGTCCTCCCGG-GTTTTCNAA 34 ** * * **** ** * ** ** ** consensus_6749#0 GAGGTTGTCTCCGGTTTCGAGGATGTCATC--AAGCCCATTGAGGCTNTTGGCTCCAGCA 238 consensus_6749#1 GGAATTGTCCA----TCCAAAGGCCCCATTTGAGGGCTTCTTGGGCTCCCAAC-CAAGCG 89 * ***** * * * * *** * * * * **** * * *** consensus_6749#0 GCGGTACCCCCAAGACC--AAGGTCACC-ATTGTCAACGCTGGTACCGTNTAAATCGGTC 295 consensus_6749#1 GTACC-CCCCCAAGACCCAAAGGTCACCCATTGTCAACGCTGGTACCGTCTAAATCGGTC 148 * *********** ********* ******************** ********** consensus_6749#0 CTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGG 355 consensus_6749#1 CTTTGAGGTGACAGGTTTTTTTGGTCCTGATTGCGTGCGTGCCTAGTCGGGAGTGCGGGG 208 ************************************************************ consensus_6749#0 TTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGG 415 consensus_6749#1 TTCATGACTTAGTAGTCGGGTCTACTAGGTGGATTCAAGGCGAAACGTCGATGCGGTTGG 268 ************************************************************ consensus_6749#0 AGGGTAGAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCC 475 consensus_6749#1 AGGGTANAAACAGTTGTGCGATACGATACGAATGGTTCCAATCCTATAGCGTTAGTTCCC 328 ****** ***************************************************** consensus_6749#0 AGTNACCTAAAAAGCAATCACTCATGTCTGGTTCNAAAAAAGAAAAAAAAAAA 528 consensus_6749#1 AGTAACCTAAAAAGCAATCACTCATGTCTGGTTCAAAAAAAGAAAAAAAAAA- 380 *** ****************************** ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||