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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 675 cluster # 675       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_675#0 length = 396 sequences # 1  
consensus_675#1 length = 164 sequences # 1  

consensusID : consensus_675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT]

[+] EMBL CF327241             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT]


>consensus_675#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAA AGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTT AAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTT GCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATT TTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTT TTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCT TTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT



consensusID : consensus_675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACACGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT]

[+] EMBL CF301357             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACACGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT]


>consensus_675#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACA CGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG GCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_675#0      --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----------TTTTTTTAACC 48
consensus_675#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACA 60
                       *************************************          **  ****** 

consensus_675#0      CGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG 108
consensus_675#1      CGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG 120
                     *********** ************************************************

consensus_675#0      GCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACC 168
consensus_675#1      GCACCCCCGTTAAAATAAAACCCAAT---TTTACTCCTTCAATCCAT------------- 164
                     *********** *************    ** *  *   ***   *              

consensus_675#0      CCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTT 228
consensus_675#1      ------------------------------------------------------------
                                                                                 

consensus_675#0      TTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAA 288
consensus_675#1      ------------------------------------------------------------
                                                                                 

consensus_675#0      TTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGG 348
consensus_675#1      ------------------------------------------------------------
                                                                                 

consensus_675#0      AATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT 396
consensus_675#1      ------------------------------------------------
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)