These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT] [+] EMBL CF327241 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACCCCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTTTTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAATTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGGAATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT] consensusID : consensus_675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACACGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT] [+] EMBL CF301357 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACACGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAGGCACCCCCGTTAAAATAAAACCCAATTTTACTCCTTCAATCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_675#0 --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----------TTTTTTTAACC 48 consensus_675#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACGGAACACTTACTTTAACA 60 ************************************* ** ****** consensus_675#0 CGGTTTAAAAAAAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG 108 consensus_675#1 CGGTTTAAAAACAGGGGAATTACAATGTAATTGTTTTTACCCATGCCCAGTGCCAAAAAG 120 *********** ************************************************ consensus_675#0 GCACCCCCGTTTAAATAAAACCCAAACGATTCAAACTAACAAAATAAAAGTCCCCCAACC 168 consensus_675#1 GCACCCCCGTTAAAATAAAACCCAAT---TTTACTCCTTCAATCCAT------------- 164 *********** ************* ** * * *** * consensus_675#0 CCCTGACAATTTGCTGAGTTTTTTTGACAAATCCCCCAATAAAACAAATACCCCCCCTTT 228 consensus_675#1 ------------------------------------------------------------ consensus_675#0 TTGAAAAACATTTTGTTCCACAAAATACCCCCTACTCAAATTGTTTTTATAACCAAAAAA 288 consensus_675#1 ------------------------------------------------------------ consensus_675#0 TTAAAACCCCTTTTTAACACTACGACCCTTGCTTTTTTTGTAAAAGGAATCCCCGAGGGG 348 consensus_675#1 ------------------------------------------------------------ consensus_675#0 AATTTAACCCCTTTCACCAAAAATCCTTCTAACCAGCTGAATGTCCTT 396 consensus_675#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||