These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 955 fasta sequence [CAAATTCACCATCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAATTCAAAAACTGCATGAGGAA-GGTAAAAAAGGCTGGCAAGA-TTGGCTTCTCTA-GGAAATG-CCCGTACGAGAT-GGCTAT-GGCAACAATG-ACCTCA-GGGATGGACAT-GGCCATCATGC-TCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAGCATGTTATGGACAAACTCTGGTGCTTGTGTAATCAGTGGCGTCTGTTGATTGATTGATTTGGTGCTTGAGGATGAAACAGTAGGCAGTGGGCACACACAACTGGAAAGTGTGTTGGAAAACAAAAGACATTACACATAAGAAATGATAGTATTACCGTT] [+] EMBL AK108410 [CAAATTCACCATCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACCGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCT GAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAATTCAAAAACTGCATGAGGAA GGTAAAAAAGGCTGGCAAGA TTGGCTTCTCTA GGAAATG CCCGTACGAGAT GGCTAT GGCAACAATG ACCTCA GGGATGGACAT GGCCATCATGC TCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAGCATGTTATGGACAAACTCTGGTGCTTGTGTAATCAGTGGCGTCTGTTGATTGATTGATTTGGTGCTTGAGGATGAAACAGTAGGCAGTGGGCACACACAACTGGAAAGTGTGTTGGAAAACAAAAGACATTACACATAAGAAATGATAGTATTACCGTT] [+] EMBL OSA238116 [ TCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAATTCAAAAACTGCATGAGGAA GGTAAAAAAGGCTGGCAAGA TTGGCTTCTCTA GGAAATG CCCGTACGAGAT GGCTAT GGCAACAATG ACCTCA GGGATGGACAT GGCCATCATGC TCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAG ] [+] EMBL OSS15672A [ TCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTNTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTNAAATGCCATGAGAAATTCAAAAACTGCATGAGGAAGGGTAAAAAAGGCTGGCAAGATTTNGCTTCTCTAGGGAAATGNCCCGTACGAGATGGGCTATGGGAAACAATGNCCCTCAGGGGTTGGACATGGGCCATCATGCTTCAGTCAGTT ] consensusID : consensus_6750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TCAGGGATGGACATGGCCATCATGCTCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTNTCCTTACGGAGGTACTCCATTTNTTAGATGATGGTTAACCGTATTTGATTGCNCCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTNTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAANAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCNCTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTNTGGATNTCTTTAACATAATAATGTAACACTCCTGAGTCTNTGAGCATGTTATGGGCAAAAAAAAAAAAAAAAAA] [+] EMBL AU174087 [TCAGGGATGGACATGGCCATCATGCTCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTNTCCTTACGGAGGTACTCCATTTNTTAGATGATGGTTAACCGTATTTGATTGCNCCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTNTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAANAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCNCTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTNTGGATNTCTTTAACATAATAATGTAACACTCCTGAGTCTNTGAGCATGTTATGGGCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6750#0 CAAATTCACCATCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCC 60 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 TCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCA 120 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 GCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCG 180 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 GCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCC 240 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 GCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAAT 300 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 TCAAAAACTGCATGAGGAAGGTAAAAAAGGCTGGCAAGATTGGCTTCTCTAGGAAATGCC 360 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 CGTACGAGATGGCTATGGCAACAATGACCTCAGGGATGGACATGGCCATCATGCTCAGTC 420 consensus_6750#1 -----------------------------TCAGGGATGGACATGGCCATCATGCTCAGTC 31 ******************************* consensus_6750#0 AGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACT 480 consensus_6750#1 AGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTNTCCTTACGGAGGTACT 91 ******************************************* **************** consensus_6750#0 CCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTAC 540 consensus_6750#1 CCATTTNTTAGATGATGGTTAACCGTATTTGATTGCNCCAAAGTTTGATTTTTTTTTTAC 151 ****** ***************************** *********************** consensus_6750#0 AGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGC 600 consensus_6750#1 AGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTNTTTTCCCCTTGCTGCACAATTTGC 211 *********************************** ************************ consensus_6750#0 AGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGG 660 consensus_6750#1 AGCATATAGTATTTTTTTTGTACAANAGATTTGGCATGTAAACTGAACCAAATGTTCCGG 271 ************************* ********************************** consensus_6750#0 CTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTA 720 consensus_6750#1 CTCNCTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTA 331 *** ******************************************************** consensus_6750#0 CTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACA 780 consensus_6750#1 CTTTGCTTTGATACGTTGGATCAGTAGGGGTNTGGATNTCTTTAACATAATAATGTAACA 391 ******************************* ***** ********************** consensus_6750#0 CTCCTGAGTCTCTGAGCATGTTATGGACAAACTCTGGTGCTTGTGTAATCAGTGGCGTCT 840 consensus_6750#1 CTCCTGAGTCTNTGAGCATGTTATGGGCAAAAAAAAAAAAAAAAAA-------------- 437 *********** ************** **** consensus_6750#0 GTTGATTGATTGATTTGGTGCTTGAGGATGAAACAGTAGGCAGTGGGCACACACAACTGG 900 consensus_6750#1 ------------------------------------------------------------ consensus_6750#0 AAAGTGTGTTGGAAAACAAAAGACATTACACATAAGAAATGATAGTATTACCGTT 955 consensus_6750#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||