These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCCATATCTTGTTTGCTGGGATTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGTACAGAGCATCCGTTAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGCATAGTTATGTAAAACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTGAACACCTCATCTATAAGCTCATTATTGGCTTGATGTCCCAAAACAAGTAATTAGATTATATTACACAAGCATATACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTGGTTGTTTGCATACCGAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACCATGTAACATTCAGTCTAGAATAGTCAGGAAAGAAAATCCAAATGGCATTTACTAATACCAGTAGTATCTCCCACCAATACTTATATTGTTAAAGAAGCCCGTTCAGTATTTCACA] [+] EMBL CB685940 [AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCCATATCTTGTTTGCTGGGATTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGTACAGAGCATCCGTTAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGCATAGTTATGTAAAACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTGAACACCTCATCTATAAGCTCATTATTGGCTTGATGTCCCAAAACAAGTAATTAGATTATATTACACAAGCATATACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTGGTTGTTTGCATACCGAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACCATGTAACATTCAGTCTAGAATAGTCAGGAAAGAAAATCCAAATGGCATTTACTAATACCAGTAGTATCTCCCACCAATACTTATATTGTTAAAGAAGCCCGTTCAGTATTTCACA] consensusID : consensus_6753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGCGCCGCTCCGCTCCGCCGCGCCGGTGGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCGGGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTGGTGTGGTCCATGTCAATACATGGTTCCTATACTTCACGAAGTAAGCGAAAAGTTAGGCGATAAGATTCAAGTCGTAAAAATTGATACAGAGAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTTCAAGAATGGGAAACCTTGTCATCGCTTTGAGGGAGCGCTGCCTGCTAATCAACTAATCCAACAGATTGAGAGTGCTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGCAGAAAATTGTCCCTGACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGTATTATTGGTGCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAGTTCTTTCTGCCATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATATTT] [+] EMBL CB685939 [CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGCGCCGCTCCGCTCCGCCGCGCCGGTGGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGCCGTGGCGCCACGCTGCGGGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGTTACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACTTGGTGTGGTCCATGTCAATACATGGTTCCTATACTTCACGAAGTAAGCGAAAAGTTAGGCGATAAGATTCAAGTCGTAAAAATTGATACAGAGAAGTACACAAGCATTGCTAATCGTTACCAAATTGAAGCATTGCCAACTTTTATTATCTTCAAGAATGGGAAACCTTGTCATCGCTTTGAGGGAGCGCTGCCTGCTAATCAACTAATCCAACAGATTGAGAGTGCTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGCAGAAAATTGTCCCTGACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGTATTATTGGTGCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAGTTCTTTCTGCCATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATATTT] consensusID : consensus_6753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence [AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACC-CATATC-TTGTTTGCTGGGATTTGAGGTAATTTAAAAAAG-ACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCACACATGCTACTTTGCAACCTCCAAAGCACTCTCAATCTGTTGGATTAGTTGATTAGCAGGCAGCGCTCCCTCAAAGCGATGACAAGGTTTCCCATTCTTGAAGATAATAAAAGTTGGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGTACTTCTCTGTATCAATTTTTACGACTTGAATCTTATCGCCTAACTTTTCGCTTACTTCCTGAAGTATAGGAACCATGTATTGACATGGACCACACCAAGTTGCATAGAAGTCGACTAGTACAGGCTTTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTCTTCGCTTGAACCCGCAGCGTGGCGCCACGGCGGGACGGCGCGGCCGCCATGGAAT] [-] EMBL AK062343 [AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACC CATATC TTGTTTGCTGGGATTTGAGGTAATTTAAAAAAG ACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACTGTTGTCCACAAGAAAATTGGTAGCTTCCGCACACATGCTACTTTGCAACCTCCAAAGCACTCTCAATCTGTTGGATTAGTTGATTAGCAGGCAGCGCTCCCTCAAAGCGATGACAAGGTTTCCCATTCTTGAAGATAATAAAAGTTGGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGTACTTCTCTGTATCAATTTTTACGACTTGAATCTTATCGCCTAACTTTTCGCTTACTTCCTGAAGTATAGGAACCATGTATTGACATGGACCACACCAAGTTGCATAGAAGTCGACTAGTACAGGCTTTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTCTTCGCTTGAACCCGCAGCGTGGCGCCACGGCGGGACGGCGCGGCCGCCATGGAAT] [-] EMBL CB685835 [ CCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAAAGTATAATCATCAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCACAGAAGATCAGCAAGCTGCATCTTAGGTGTTTGCACCACATATCATTGTTTGCTGGGATTTGAGGTAATTTAAAAAAGAACAGCAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6753#0 -------AGGTAATTTCCCTCAGACCTTTTAAATACAGTAAATGGTGCCCAGAGGTACAA 53 consensus_6753#2 AATGATAAGGTAATTTCCCTCAGAATTGATAAATACAGTAAATGGTGCCCAGAGGTACAA 60 consensus_6753#1 -------------CCGCCCCGCGGCCCTCGTCGCGCGCTCGTCGGCGGC----GCCGCTC 43 *** * * * ** * * * * consensus_6753#0 AGTATAATCAT-CAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCAC 112 consensus_6753#2 AGTATAATCAT-CAGTTAGTTCACACAATTTTACAACAACATAAAAAAAAAACAGACCAC 119 consensus_6753#1 CGCTCCGCCGCGCCGGTGGTGGTGGCGGCGGGGCTTCGGCGAGCGGCCGCGCCGTCCCGC 103 * * * * * ** * * * * * ** * consensus_6753#0 AGAAGATCAGCAAGCTGCATCTT-AGGTGTTTGCACCCATATCTT----GTTTGCTGGGA 167 consensus_6753#2 AGAAGATCAGCAAGCTGCATCTT-AGGTGTTTGCACCCATATCTT----GTTTGCTGGGA 174 consensus_6753#1 CGTGG--CGCCACGCTGCGGGTTCAAGCGAAGAAACAGACGTTCTCTTCGTTTGACGAGT 161 * * * ** ***** ** * * * ** * * * ***** * * consensus_6753#0 TTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACT 227 consensus_6753#2 TTTGAGGTAATTTAAAAAAGACAGCATCAATTCACGGAGAATCAATTGTTCACCTATACT 234 consensus_6753#1 TACTGGAGAAGTCTGAAAAGCCTGTACTAGTCGACTTCTATGCAACT---------TGGT 212 * * ** * ***** * * * * * ** * *** * * * consensus_6753#0 GTTGTCCACAAGAAAATTGGTAGCTTCCGCTGGTACGAATAATAGTATTCTGAAGTCAGT 287 consensus_6753#2 GTTGTCCACAAGAAAATTGGTAGCTTCCGC--ACAC-----ATGCTACTTTGCAACC--T 285 consensus_6753#1 GTGGTCCATGTCAATACATGGTTCCTATACT-TCACG----AAGTAAGCGAAAAGTTAGG 267 ** ***** ** * * * * * ** * * * consensus_6753#0 ACAGAGCATCCGTTAGGATAACATATAAACACAATCCAGTAGGGATTCTTTAGTTAATGC 347 consensus_6753#2 CCAAAGCACTCT------CAATCTGTTGGATTAGTTGATTAG--------CAGGCAGCGC 331 consensus_6753#1 CGATAAGATTCA--AGTCGTAAAAATTGATACAGAGAAGTACACAAGCA-TTGCTAATCG 324 * * * * * * * * ** * * consensus_6753#0 ATAGTTATGTAAAACAGTGTCTAACTTTGATACTTTGATTTTCCATAATTCATATTATTG 407 consensus_6753#2 ----TCCCTCAAAGCGATGACAAGGTTTCCCATTCT-------TGAAGATAATAAAAGTT 380 consensus_6753#1 TTACCAAATTGAAGCATTGCCAACTTTTATTATCTT-------CAAGAATGGGAAACCTT 377 ** * ** * * *** * * * * * consensus_6753#0 AACACCTCATCTATAAGCTCATTATTGGCT-TGATGTCCCAAAACAAGTAATTAGATTAT 466 consensus_6753#2 GGCAATGCTTCAATTTGGTAACGATTAGCAATGCTTGTGTACTTCTCTGTATCAATTTTT 440 consensus_6753#1 GTCATCGCTTTGA-GGGAGCGCTGCCTGCT--AATCAACTAATCCAACAGATTGAGAGTG 434 ** * * * * ** * * * ** consensus_6753#0 ATTACACAAGCATATACTAGCTAGTTTGTTATACTACACTTCTATAGTATGATTACTGTG 526 consensus_6753#2 ACGACTTGAATCT-TATCGCCTAACTTTTCGC-TTAC-TTCCTGAAGTATAGGAACCATG 497 consensus_6753#1 CTTTGGAGGTTGCAAAGTAGCATGTGTGGTGAGCACTGAGCTGGGCAGAAAATTGTCCCT 494 * * * * consensus_6753#0 GTTGTTTGCATACCGAATAAGAGAAACAAGAAAAATCAGATTCAGTTCATTCAGCAAACC 586 consensus_6753#2 --TATTGACATG------GACCACACCAAGTTGCATAGAAGTCGACTAGTACAG---GCT 546 consensus_6753#1 GACATTTGTATTGCTACCCATCGCATCTGCATTTACATGTTTGAGTATTATTGG-----T 549 ** ** * * * * * * consensus_6753#0 ATGTAACATTCAGTCTAGAATAGTCAGG-AAAGAAAATCCAAATGGCATTTACTAATACC 645 consensus_6753#2 TTTCAGACTTCTCCAGTAACTCGTCAAACGAAGAGAACGTCTGTTTC-TTCGCTTGAACC 605 consensus_6753#1 GCACATTATTCATTATTTGTTAGTTATGCATGAATGGTATTCGATAG--TTCTTTCTGCC 607 * *** * ** * * * * ** consensus_6753#0 AGTAGTATCTCCCACCAATACTTATATTGTTAAAGAAGCCCGTT---CAGTATTTCACA 701 consensus_6753#2 CGCAGCGTGGCGCCACGGCGG-------GACGGCGCGGCCGCCA---TGGAAT------ 648 consensus_6753#1 ATCTACATCTCACATACATTACTGAAGAGACATGAGTCCCTGTTATTTGATATTT---- 662 * * * * ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||