These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 284 fasta sequence [GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA] [+] EMBL AT003624 [GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAA ] [+] EMBL AT003758 [GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAA ] [+] EMBL AT003623 [ ATCATGGCGTACGGATNAAGGGCAAGGGGCGCGGGGAGGGCATAGAACCCAGTGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAACCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTTGGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGGCCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA] consensusID : consensus_6761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAGTGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAACCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTTGGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGGCCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA] [+] EMBL AT003510 [GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAGTGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAACCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTTGGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGGCCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6761#0 GAAGGAGAATCATGGCGTACGGATGAAGGGCAAGGGGCNCGGGGAGGGCATAGAACCCAG 60 consensus_6761#1 GAAGGAAAATCATGGCGTACGGATGAAGGGCAAGGGGCGCGGGGAGGGCATANAACCCAG 60 ****** ******************************* ************* ******* consensus_6761#0 TGCTTCTTTTGGGGACCCCCTTTTGTCGGGCTCCAAGCACGGCCCAGGATTCAAAGGAAA 120 consensus_6761#1 TGNTTNTTTTNGGGNCCCCCTTTTNTNGGGCTCCNAGCACGGCCCAGGATTCAAANGAAA 120 ** ** **** *** ********* * ******* ******************** **** consensus_6761#0 CCGGAAAAAAGGCTGTTGTTGTTTTTTCCTACACGGCCGGCATGCNCATTGGAGTTCGTT 180 consensus_6761#1 CCNGAAAAAANNNTGTTGNTNTTTTTTNCTANACGNCCGGCANGCNCNNTGGAGNTCGTT 180 ** ******* ***** * ****** *** *** ****** **** ***** ***** consensus_6761#0 GGTCTTGTTTTCNCTCGCGGAAATGGGAATCGGAAATTTCATTTTAACCCCTTCACCGGG 240 consensus_6761#1 GGTCNTNTTTTCACTNGCGGAAATGGGAATCGGNAATTTNNTTTTAANCACTTNCCCGGG 240 **** * ***** ** ***************** ***** ****** * *** ***** consensus_6761#0 CCGACCAAAAGTGAACTTTTGCCCCCGAAAAAAAAAAAAAAAAA 284 consensus_6761#1 CCGACCAAAANTNAACTTTTGCCCCCGTGTTNAAAAAAAAAAAA 284 ********** * ************** ************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||