These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [GGNTCCNNATTTGGGCCNAAGCTGGTANNGAATTNGGGCCGAGGAAAAGGTGTAGCGAACCCAGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGNCAAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAATTTAGGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCNCATNTTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003576 [GGNTCCNNATTTGGGCCNAAGCTGGTANNGAATTNGGGCCGAGGAAAAGGTGTAGCGAACCCAGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGNCAAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAATTTAGGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCNCATNTTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 402 fasta sequence [TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003741 [TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003549 [ ATTCGGGCNCGAGGAAAAGGTNTGANCGAACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGTTAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATTTGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTATGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAATTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCCCATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6762#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [TGGTGCCNAATTCGGCNCGAGGAAAAGGTGTGAGCGAACNCANCTNTNTCGCGNGCATGGGTGGATAATGNAGCGATTTTAANCTGTGTTGGGGTTAGCTNTTTGCAACGCATTTGGGNCNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGCGCNANAGCATGGTGGATCGGAATCATGGGATCCGTCATNCCNCCCCTATGACAAGGTATATNTCCTGGCAAAATGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAATTTAGGNCTTTATAGGGAACGCTTNCCTTGAAGGAACCCGGANCCNCGTAGCTATACCCNCATNTTCAANCCCCGNTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003519 [TGGTGCCNAATTCGGCNCGAGGAAAAGGTGTGAGCGAACNCANCTNTNTCGCGNGCATGGGTGGATAATGNAGCGATTTTAANCTGTGTTGGGGTTAGCTNTTTGCAACGCATTTGGGNCNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATTTGCTTNCAAAGCGCNANAGCATGGTGGATCGGAATCATGGGATCCGTCATNCCNCCCCTATGACAAGGTATATNTCCTGGCAAAATGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAATTTAGGNCTTTATAGGGAACGCTTNCCTTGAAGGAACCCGGANCCNCGTAGCTATACCCNCATNTTCAANCCCCGNTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6762#0 GGNTCCNNATTTGGGC-CNAAGCTGGTANNGAATTNGGGCC-GAGGAAAAGGTGT-AGCG 57 consensus_6762#1 -----------TGGGCACGAAGCTGGTGCCNAATTCGGGCNCGAGGAAAAGGTNTGANCG 49 consensus_6762#2 -----------------------TGGTGCCNAATTCGGCNC-GAGGAAAAGGTGTGAGCG 36 **** **** ** *********** * * ** consensus_6762#0 AACCC-AGNTNTTTNGCGNGCATGGGNGGATAATGGAGCGATTTTAAGCTGTGTTGGGGT 116 consensus_6762#1 AACNCCANCTGTTTCGCGTGCATGGGTGGATAATGGAGCGATTTTAAGCTGTGTTGGGGT 109 consensus_6762#2 AACNC-ANCTNTNTCGCGNGCATGGGTGGATAATGNAGCGATTTTAANCTGTGTTGGGGT 95 *** * * * * * *** ******* ******** *********** ************ consensus_6762#0 TAGCTCTTTGCAACGCATTTGGGACNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATT 176 consensus_6762#1 TAGCTCTTTGCAACGCATTTGGGACACTTTGTTGACTGGCAAAGCTACCGTAGTATGATT 169 consensus_6762#2 TAGCTNTTTGCAACGCATTTGGGNCNCTTTNTTGACTGGCAAAGCTNCCGTAGTATGATT 155 ***** ***************** * **** *************** ************* consensus_6762#0 TGCTTNCAAAGNGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTA 236 consensus_6762#1 TGCTTACAAAGCGCGAGAGCATGGTGGATCGGAATCATGGGATCCGTCATGCCGCCCCTA 229 consensus_6762#2 TGCTTNCAAAGCGCNANAGCATGGTGGATCGGAATCATGGGATCCGTCATNCCNCCCCTA 215 ***** ***** ** * ********************************* ** ****** consensus_6762#0 TGNCAAGGTATATATCCTGGCAAAATGGCGTGTTGGNGTTTTTATTCGCCCTTGGAACAA 296 consensus_6762#1 TGACAAGGTATATATCCTGGCAAAATGGCGTGTTGGTGTTTTTATTCGCACTTGGAACAA 289 consensus_6762#2 TGACAAGGTATATNTCCTGGCAAAATGGNGNGTTGGTGTTTTTNTTCGCCCTTGGANCAA 275 ** ********** ************** * ***** ****** ***** ****** *** consensus_6762#0 TTTAGGNCTTTNTAGGGAACGCTTNCCTTGAAGGAACCCGGAACCNCGTAGCTNTACCCN 356 consensus_6762#1 TTTAGGACTTTATAGGGAACGCTTGCCTTGAAGGAACCCGGAACCACGTAGCTATACCCC 349 consensus_6762#2 TTTAGGNCTTTATAGGGAACGCTTNCCTTGAAGGAACCCGGANCCNCGTAGCTATACCCN 335 ****** **** ************ ***************** ** ******* ***** consensus_6762#0 CATNTTCAAACNCCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 409 consensus_6762#1 CATATTCAAACACCGATGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 402 consensus_6762#2 CATNTTCAANCCCCGNTGNTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 388 *** ***** * *** ** * ******************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||