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Oryza sativa
cluster # 6765 cluster # 6765       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6765#0 length = 1697 sequences # 4  

consensusID : consensus_6765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1697
fasta sequence
                              [TCAAGGACATGGCCATTGCTATGCATTTCGAGCTCCGTGTCGTGAAATCTGACCGGAGCCGGTTCATCGCCAAGTGCGCGAGGGAAGGCTGCCCGTGGCGTGTGCATGTGGCAAAGTGCCATGGTGTCCCGACTTTCACTGTACGCACATTGCACGGGGAGCACACGTGCGACGGTGTGCGTGACTTGCATCATCACCAGGCTACCGTTGGTTGGGTTGCTAGGTCCGTTGAGGCAACGCTAAGAGATAACCCACAGTATAAGCCAAAAGAGATATTGCAGGATATCCGAGAGCAGCATGGAGTAGCAGTTTCTTATATGCAGGCATGGCGTGGGAAGGAGAGAAGCATGGCTGCTGTTCATGGCACCCTTGAGGATGGATATCGCTTTCTTCCTGCCTACTGTGAGCAGATTGTACAGACAAATCCTGGCAGTGTTGCAATATACAAAGGGACTGGACCAGATAATAGCTTCCAGCGGCTGTTCGTGTCGTTCCATGCATCTATTCATGGTTTCTTAAATGCATGTAGACCCCTTTTGGAAATTGACAAGGCAGACCTCAAGGGAAAGTATCTTGGGACATTGCTATGTGCGTCAGCTGTTGATGCTGAAAACATGATGTTCCCGCTAGCATTTGGTATTGTTGACGCTGAAAGTGATGAAAACTGGATGTGGTTTTTTTCAGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGATGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAAACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACGAGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAGCAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCCAACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATAT-GGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAGATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCCAGCCAATCTATTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAGGTGCAGGAAGCAAAGCATATGCGGTTCTTCGCCCGCCCAAGATCCGGAGGCCTCCTGGTCGTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAAACGAATCGTTCAATGTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGACATTAGATTATTGCTATCATA]

[+] EMBL AK071288             [TCAAGGACATGGCCATTGCTATGCATTTCGAGCTCCGTGTCGTGAAATCTGACCGGAGCCGGTTCATCGCCAAGTGCGCGAGGGAAGGCTGCCCGTGGCGTGTGCATGTGGCAAAGTGCCATGGTGTCCCGACTTTCACTGTACGCACATTGCACGGGGAGCACACGTGCGACGGTGTGCGTGACTTGCATCATCACCAGGCTACCGTTGGTTGGGTTGCTAGGTCCGTTGAGGCAACGCTAAGAGATAACCCACAGTATAAGCCAAAAGAGATATTGCAGGATATCCGAGAGCAGCATGGAGTAGCAGTTTCTTATATGCAGGCATGGCGTGGGAAGGAGAGAAGCATGGCTGCTGTTCATGGCACCCTTGAGGATGGATATCGCTTTCTTCCTGCCTACTGTGAGCAGATTGTACAGACAAATCCTGGCAGTGTTGCAATATACAAAGGGACTGGACCAGATAATAGCTTCCAGCGGCTGTTCGTGTCGTTCCATGCATCTATTCATGGTTTCTTAAATGCATGTAGACCCCTTTTGGAAATTGACAAGGCAGACCTCAAGGGAAAGTATCTTGGGACATTGCTATGTGCGTCAGCTGTTGATGCTGAAAACATGATGTTCCCGCTAGCATTTGGTATTGTTGACGCTGAAAGTGATGAAAACTGGATGTGGTTTTTTTCAGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGATGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAAACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACGAGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAGCAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCCAACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATAT GGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAGATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCCAGCCAATCTATTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAGGTGCAGGAAGCAAAGCATATGCGGTTCTTCGCCCGCCCAAGATCCGGAGGCCTCCTGGTCGTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAAACGAATCGTTCAATGTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGACATTAGATTATTGCTATCATA]
[+] EMBL CB000558             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGCTGTTGAAGCTGAAAACATGATGTTCCCGCTAGCACTTGGTATTGTTGACGCTGAAAGTGATGAAAACTGGATGTGGTTTTTTTCCGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGATGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAAACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACGAGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAGCAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCCAACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSC23102             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATAT GGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAGATCC                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC24821             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATATGGGCATTNCATGTGCACATGCTGTTGCT                                                                                                                                                                                                                                                                                                                                                   ]


>consensus_6765#0 TCAAGGACATGGCCATTGCTATGCATTTCGAGCTCCGTGTCGTGAAATCTGACCGGAGCC GGTTCATCGCCAAGTGCGCGAGGGAAGGCTGCCCGTGGCGTGTGCATGTGGCAAAGTGCC ATGGTGTCCCGACTTTCACTGTACGCACATTGCACGGGGAGCACACGTGCGACGGTGTGC GTGACTTGCATCATCACCAGGCTACCGTTGGTTGGGTTGCTAGGTCCGTTGAGGCAACGC TAAGAGATAACCCACAGTATAAGCCAAAAGAGATATTGCAGGATATCCGAGAGCAGCATG GAGTAGCAGTTTCTTATATGCAGGCATGGCGTGGGAAGGAGAGAAGCATGGCTGCTGTTC ATGGCACCCTTGAGGATGGATATCGCTTTCTTCCTGCCTACTGTGAGCAGATTGTACAGA CAAATCCTGGCAGTGTTGCAATATACAAAGGGACTGGACCAGATAATAGCTTCCAGCGGC TGTTCGTGTCGTTCCATGCATCTATTCATGGTTTCTTAAATGCATGTAGACCCCTTTTGG AAATTGACAAGGCAGACCTCAAGGGAAAGTATCTTGGGACATTGCTATGTGCGTCAGCTG TTGATGCTGAAAACATGATGTTCCCGCTAGCATTTGGTATTGTTGACGCTGAAAGTGATG AAAACTGGATGTGGTTTTTTTCAGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGA TGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAA ACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACG AGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAG CAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCC AACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATT TTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTA TAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAA ACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAG CTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAG TCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGT GGCAAATATATGGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAG ATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCC AGCCAATCTATTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAG GTGCAGGAAGCAAAGCATATGCGGTTCTTCGCCCGCCCAAGATCCGGAGGCCTCCTGGTC GTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAAACGAATCGTTCAAT GTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGACATT AGATTATTGCTATCATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)