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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1224 fasta sequence
[CCTTCTTCTCCCTCCGCGTCGCATTCGCATCACCCCCCCGAAACCCTAGACCCACCACCACCACCACCATCCCCGAGCTCGCGGAGAGGCAGCGAGAGCGAGAGGTAGCTGCTAGTAGGCGTCGGGCGAGGAGATGTACGCGGACCAGATCTCCACCGGCCGGAAGCGCTCCATCCACGACCGCATCGACGGCGACCAGCCCGCCGCCCGCGCTGGCGCCGGCGCCGGCGGCCGGGGGGCCCGTAACCCGCCGTCCAAGAGGCAACGGCAAACTGATGAAAAATGGAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCAAAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCATCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTACCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCGATGGGTCCCCGGAAGAAGATCATGCTTGCCTTGGAATCGAGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTATGCTCCTCTGCTTGCTTGGTAAACCCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGCGCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGAGCATTCCGCATTCTCAGCCAGTTTAGGATGTTTTAGAGGCTGGATGAAGGTTGACAATGTAATATTATTAGTCTCCTGTTAATTTTTATCTGGTCGGCTTGCTTGTCAGGACTCAGGACCAGCTGATTAATCAAAATTGNTCATGCGGTACACATAGTATTGGAGCTGTGCCCGATGNTCTTGGGGGTTGCTTTGCTGCTGNATACGATTATTATTCCATTGGTTGGCTCCTCTCCATCGGAGGGAGGGGGGATGATACATTTTGGGTTATTATTATTTNTTAAATTTNNATT]
[+] EMBL AK103076 [CCTTCTTCTCCCTCCGCGTCGCATTCGCATCACCCCCCCGAAACCCTAGACCCACCACCACCACCACCATCCCCGAGCTCGCGGAGAGGCAGCGAGAGCGAGAGGTAGCTGCTAGTAGGCGTCGGGCGAGGAGATGTACGCGGACCAGATCTCCACCGGCCGGAAGCGCTCCATCCACGACCGCATCGACGGCGACCAGCCCGCCGCCCGCGCTGGCGCCGGCGCCGGCGGCCGGGGGGCCCGTAACCCGCCGTCCAAGAGGCAACGGCAAACTGATGAAAAATGGAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCAAAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCATCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTACCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCGATGGGTCCCCGGAAGAAGATCATGCTTGCCTTGGAATCGAGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTATGCTCCTCTGCTTGCTTGGTAAACCCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGCGCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGAGCATTCCGCATTCTCAGCCAGTTTAGGATGTTTTAGAGGCTGGATGAAGGTTGACAATGTAATATTATTAGTCTCCTGTTAATTTTTATCTGGTCGGCTTGCTTGTCAGGACTCAGGA ]
[+] EMBL CB097189 [ AGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGCGTACGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCAGCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTTCCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCAATGGGTCCCAGGAAGAAGATCATGCTTGCCTTGGAATCGGGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTATGCTCCTCTGCTTGCGTGGCAAACTCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGCGCTGGGCGTCTTGTAATGCGTCTTCTAACTAGTTGAGCATTCCGCATTCTCAGCCAGTTTAGGATGTTTTATAGGCTGGATGAAGGTTGACAATGTAATATTATTAGTCTCCTGGTAATTTTTATCTGGTCAGCTTGCTTCTCANGACTCANGACCAGCTGATTAATCAAAATTGNTCATGCGGTACACATAGTATTGGAGCTGTGCCCGATGNTCTTGGGGGTTGCTTTGCTGCTGNATACGATTATTATTCCATTGGTTGGCTCCTCTCCATCGGAGGGAGGGGGGATGATACATTTTGGGTTATTATTATTTNTTAAATTTNNATT]
consensusID : consensus_6767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence
[GAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCAAGTAATAAAAGAAAGAAGTTTTTGATGCACCTTAAATAAAGACAGGCCTTTTGTATTCTTATTTTATTCTTATCTTCTTGCGTATTATGTTAAGAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCAGCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTTCCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCAATGGGTCCCAGGAAGAAGATCATGCTTGCCTTGGAATCGAGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTACGCTCCTCTGCTTGCGTGGCAAACTCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGCGCTGGGGCGTCTTGTAATGCGTCTTCTAACTAGTTGAGCATTCCGCATTCTCAGCCAGNTTAAGGATGGTTTATAGGCTGGATGAAGGNTGACAATGNAATATT]
[+] EMBL CA767225 [GAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCAAGTAATAAAAGAAAGAAGTTTTTGATGCACCTTAAATAAAGACAGGCCTTTTGTATTCTTATTTTATTCTTATCTTCTTGCGTATTATGTTAAGAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCTACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGCAAAGCCAGCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGTACGTCAAAGTAAGAAAGTTCCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTTCCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGCTTTGGGCATTCCAATGGGTCCCAGGAAGAAGATCATGCTTGCCTTGGAATCGAGAGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTACGCTCCTCTGCTTGCGTGGCAAACTCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGCGCTGGGGCGTCTTGTAATGCGTCTTCTAACTAGTTGAGCATTCCGCATTCTCAGCCAGNTTAAGGATGGTTTATAGGCTGGATGAAGGNTGACAATGNAATATT]
consensusID : consensus_6767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[CGAGAGCTAGGAGGCTGGCGTGTAATGTAGAAAGGCTGGCCGATTAGGAATTGTATGCTCCTCTGCTTGTCTTGGTAAACCCCAAGTGTCCGCATGTCCTGGATACGGCGCCAGAACCAAAGCGCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGACCCTTCCGCATTCTCAGCCCGTTTAGGATGTTTTAGAGGCTGGATGAAGGTTGCCCATGTAATATTATTAGTCTCCTGTTAATTTTTATCTGGTCGGCTTGCTTGTCACGGACTCAGGACCCGCTGATTAATCCAATTGTTCATCGGTACCCAGTATTGGAGCTGTGCCGATGTTCTTGGGGTTGCTTTGCTGCTGTATACGATTATTATTCCCTTGTTGTCTTCTCTCCACTCGGAGGGAGGGGGATGACACCTTTCCAACTACCTGAATTTTGGTTTATTATTATTATATCCCAAAAAAAAAA]
[+] EMBL BI813007 [CGAGAGCTAGGAGGCTGGCGTGTAATGTAGAAAGGCTGGCCGATTAGGAATTGTATGCTCCTCTGCTTGTCTTGGTAAACCCCAAGTGTCCGCATGTCCTGGATACGGCGCCAGAACCAAAGCGCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGACCCTTCCGCATTCTCAGCCCGTTTAGGATGTTTTAGAGGCTGGATGAAGGTTGCCCATGTAATATTATTAGTCTCCTGTTAATTTTTATCTGGTCGGCTTGCTTGTCACGGACTCAGGACCCGCTGATTAATCCAATTGTTCATCGGTACCCAGTATTGGAGCTGTGCCGATGTTCTTGGGGTTGCTTTGCTGCTGTATACGATTATTATTCCCTTGTTGTCTTCTCTCCACTCGGAGGGAGGGGGATGACACCTTTCCAACTACCTGAATTTTGGTTTATTATTATTATATCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6767#0 CCTTCTTCTCCCTCCGCGTCGCATTCGCATCACCCCCCCGAAACCCTAGACCCACCACCA 60
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CCACCACCATCCCCGAGCTCGCGGAGAGGCAGCGAGAGCGAGAGGTAGCTGCTAGTAGGC 120
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 GTCGGGCGAGGAGATGTACGCGGACCAGATCTCCACCGGCCGGAAGCGCTCCATCCACGA 180
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CCGCATCGACGGCGACCAGCCCGCCGCCCGCGCTGGCGCCGGCGCCGGCGGCCGGGGGGC 240
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CCGTAACCCGCCGTCCAAGAGGCAACGGCAAACTGATGAAAAATGGAAGCATGATCTTTA 300
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CCGGGAAGACGATGAACCAGCTTCAAAATCAATTGATCCACGGGATTTGCGATTGAAGCT 360
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 TCAGAAGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGTTCTGGTGTACGTGATCT 420
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 ACGTGAGATGCTTTCTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGGC 480
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 AAAGCCATCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTGT 540
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 ACGTCAAAGTAAGAAAGTACCAAAACCGACGTCATCGAAGAAGACATCTCAGCCGAAGGC 600
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 TGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATTACCTT 660
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 CCAGGCAGAAGAGGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCTTAAAGC 720
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 ------------------------------------------------------------
consensus_6767#0 TTTGGGCATTCCGATGGGTCCCCGGAAGAAGATCATGCTTGCCTTGGAATCGAGAGCGTA 780
consensus_6767#2 --------------------------------------------------CGAGAGC-TA 9
consensus_6767#1 -----GAAGCATGATCTTTACCGGGAAGACGATGAACCAGCTTCAAGTAATAAAAGA-AA 54
* ** *
consensus_6767#0 GGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGA----ATTGTATGCTCCTC 836
consensus_6767#2 GG--AGGCTGGCGTGTAATGTAGAAAGGCTGGCCGATTAGGA----ATTGTATGCTCCTC 63
consensus_6767#1 GAAGTTTTTGATGCACCTTAAATAAAGACAGGCCTTTTGTATTCTTATTTTATTCTTATC 114
* ** * * * **** * ** * ** *** *** ** **
consensus_6767#0 TGCTTG-CTTGGTAAACCCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAGC 895
consensus_6767#2 TGCTTGTCTTGGTAAACCCCAAGTGTCCGCATGTCCTGGATACGGCGCCAGAACCAAAGC 123
consensus_6767#1 TTCTTG-CGTATTATGTTAAGAATCAATTGATCCACGGGATTTGCGATTGAAGCTTCAGA 173
* **** * * ** * * ** * **** * * * **
consensus_6767#0 GCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGAGCATTCCGCATTCTCAGCCAGTTT 955
consensus_6767#2 GCTGGGCGTCTTGTAATGCGTCTTCTGACTAGTTGACCCTTCCGCATTCTCAGCCCGTTT 183
consensus_6767#1 AGAAAAGCTCTCAGCAAAGCTTTGCTGGCCAAAGGGGT-TCTGGTGTACGTGATCTACGT 232
*** * * * *** * * * * * * * * *
consensus_6767#0 AGGATGTTTTAGAGGCTGGATGAAGGTTGACAATGTAATATTATTAGTCTCCTGTTAATT 1015
consensus_6767#2 AGGATGTTTTAGAGGCTGGATGAAGGTTGCCCATGTAATATTATTAGTCTCCTGTTAATT 243
consensus_6767#1 GAGATGCTTT-----CTGGAACAATGCACCCACAGCCAGTCAATGCGGACCCTCCAAAGG 287
**** *** ***** ** * * * * ** * *** **
consensus_6767#0 TTTATCTGGTCGGCTTGCTTGTCA-GGACTCAGGACCAGCTGATTAATCAAAATTGNTCA 1074
consensus_6767#2 TTTATCTGGTCGGCTTGCTTGTCACGGACTCAGGACCCGCTGATTAATCCAA-TTGTTCA 302
consensus_6767#1 CAAAGCCAGCATCAGAGATCGTGAAAGTCACAAGGCGTGAAAATGCAGATGTAATGCCTG 347
* * * * * ** * * * ** * * * ** * **
consensus_6767#0 TGCGGTACACATAGTATTGGAGCTGTGC--CCGATGNTCTTGGGGGTTGCTTTGCTGCTG 1132
consensus_6767#2 T-CGGTACCCA--GTATTGGAGCTGTGC--C-GATGTTCTTGGGG-TTGCTTTGCTGCTG 355
consensus_6767#1 TACG----TCAAAGTAAGAAAGTTCCAAAACCGACGTCATCGAAGAAGACATCTCAGCCG 403
* ** ** *** ** * * ** * * * * * * * ** *
consensus_6767#0 NATACGATTATTATTCCATTGGTTGGCTCCTCTCCATCGGAG---GGAGGGGGGATGATA 1189
consensus_6767#2 TATACGATTATTATTCCCTTG-TTGTCTTCTCTCCACTCGGA---GGGAGGGGGATGACA 411
consensus_6767#1 AAGGCTGACAGTCCACTTGATATTTTCCTGAAATCTCTTGGACTTGAGAAGTACTCGATT 463
* * * * * ** * * * * * **
consensus_6767#0 CATTTTGGGTTA------TTATTATTTNTTAAATTTNNATT------------------- 1224
consensus_6767#2 CCTTTCCAACTACCTGAATTTTGGTTTATTATTATTATATCCCAAAAAAAAAA------- 464
consensus_6767#1 ACCTTCCAGGCAGAAGA-GGTTGACATGGCAGCCCTAAGACACATGACTGACAGTGATCT 522
** * * * * *
consensus_6767#0 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 TAAAGCTTTGGGCATTCCAATGGGTCCCAGGAAGAAGATCATGCTTGCCTTGGAATCGAG 582
consensus_6767#0 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 AGCGTAGGGAGGGCTGGCGTGTAATGTAGAAAGGCTGGGCGATTAGGAATTGTACGCTCC 642
consensus_6767#0 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 TCTGCTTGCGTGGCAAACTCAAAGTGTCCGCATGTCCTGGATACGGCGCAAGAACAAAAG 702
consensus_6767#0 ------------------------------------------------------------
consensus_6767#2 ------------------------------------------------------------
consensus_6767#1 CGCTGGGGCGTCTTGTAATGCGTCTTCTAACTAGTTGAGCATTCCGCATTCTCAGCCAGN 762
consensus_6767#0 ---------------------------------------------
consensus_6767#2 ---------------------------------------------
consensus_6767#1 TTAAGGATGGTTTATAGGCTGGATGAAGGNTGACAATGNAATATT 807
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||