These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCTGATTCTCTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCGCTAGCTGCACAATTCTTCTTATCGGAATCCAAAAATGCAACCGGCGGGGTGGTGGACGAGGGGATGATCGAGCTGCGGCGGAGGATCCACGAGATGAGGGTGGCGGAGAGCGGGTGGGAGCCGCCGGCGGAGTGGGCGGCGTGGGAGAAGGAGTGGTACGGGAGCTACGACGCCGACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGCCCCGGCGTCGGCGTCGGGATCGTGGCAGCGGTGGCGGTGAGCGTTCCGACCACCGCCTTCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAAGCTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK107776 [CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCTGATTCTCTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCGCTAGCTGCACAATTCTTCTTATCGGAATCCAAAAATGCAACCGGCGGGGTGGTGGACGAGGGGATGATCGAGCTGCGGCGGAGGATCCACGAGATGAGGGTGGCGGAGAGCGGGTGGGAGCCGCCGGCGGAGTGGGCGGCGTGGGAGAAGGAGTGGTACGGGAGCTACGACGCCGACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGCCCCGGCGTCGGCGTCGGGATCGTGGCAGCGGTGGCGGTGAGCGTTCCGACCACCGCCTTCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAAGCTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAA ] [+] EMBL CF314023 [ CTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCGGCTTCGGCCTTCGGGTTCTTGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTGCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAACTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATNTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAACATTTCGTCTACATGAATATTCCTTTGTATATGACAATTATGAATTACTCCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAATGCATTTTGACAAGTACTATTTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAAAGTTAATATTGTTCAAGCACATAGCTACATTCTTTTGATAGCGTAATCTTAACTTATAATTCTGGTCCTCCAAAAAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGTACCCCTTCACCGAAAATCAGAGATNTAAACCATTTCTATTATTAAAAAA] [+] EMBL BI806684 [CCGGCTTCGGCCTTCGGGTTCTTGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTGCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAACTAACCATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATNTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTGTCAAATTAACATTTCGTCTACATGAATATTCCTTTGTATATGACAATTATGAATTACTCCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAATGCATTTTGACAAGTACTATTTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAAAGTTAATATTGTTCAAGCACATAGCTACATTCTTTTGATAGCGTAATCTTAACTTATAATTCTGGTCCTCCAAAAAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGTACCCCTTCACCGAAAATCAGAGATNTAAACCATTTCTATTATTAAAAAA] consensusID : consensus_6769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [GACATTGAGAAACCGGCGGCGGTGAGGTNNCGNCGGCGCGACAACCCGGATCAGTTNTTTTCGGGCGNCGNCGGCGGCGGGGTGGTGGACNANGGGATGATCTAGCTGCGGCGGAGGATCCNCCANATNAGGGCGGCGGANANCGGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAAAANNANTGGTACGGGAGCTACCACCCCCACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATNAGCTNCCGCCCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGAGCGTTCCGACCNCCNCCTTCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTNTCCAACCTCCAACANTANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCNCNTGNGTTCTTTNTAGTTTATANTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTNCAGGAAAAGAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003737 [GACATTGAGAAACCGGCGGCGGTGAGGTNNCGNCGGCGCGACAACCCGGATCAGTTNTTTTCGGGCGNCGNCGGCGGCGGGGTGGTGGACNANGGGATGATCTAGCTGCGGCGGAGGATCCNCCANATNAGGGCGGCGGANANCGGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAAAANNANTGGTACGGGAGCTACCACCCCCACGTGTGCGCGCTGGTGGGCGCCGTGCAGGCCTTCCTCATNAGCTNCCGCCCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGAGCGTTCCGACCNCCNCCTTCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTNTCCAACCTCCAACANTANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCNCNTGNGTTCTTTNTAGTTTATANTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGATTTGATTATCGTTTCAATTNCAGGAAAAGAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6769#0 CATTCCACCAATTCTCCACTCTCCATCCTCCTCTAAAATCCATTTCAAATTCGCGATTCT 60 consensus_6769#2 ------------------------------------------------------------ consensus_6769#1 --------------------------------------CCGGCTTCGGCCTTCGGGTTCT 22 consensus_6769#0 GATTCT---CTCCTTAATCGAATCGCGAATTTCGTTAGCTGAATCAAATCACAGCATTCG 117 consensus_6769#2 --------------------------GACATTGAGAAACCGG--CGGCGGTGAGGTNNCG 32 consensus_6769#1 TGCCCAGCGTTGCCGGTGAGCGTTCCGACCCCCGCTTGCGTCCTCGTCTCCGGCCTCCTC 82 ** * * consensus_6769#0 CTAGCTGCACAATTCTTCTTATCGGAATCCAAA-AATGCAACCGGCGGGGTGGTGGACGA 176 consensus_6769#2 NCGGCGCGACAACCCGGATCAGTTNTTTTCGGGCGNCGNCGGCGGCGGGGTGGTGGACNA 92 consensus_6769#1 CATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACTAGAAGCTTAGCTTCCAACTAACC 142 ** ** * * * * consensus_6769#0 GGGGATGATCGAGCTGCGGCGG-----AGGATCCACGAGATGAGGGTGGC---GGAGAGC 228 consensus_6769#2 NGGGATGATCTAGCTGCGGCGG-----AGGATCCNCCANATNAGGGCGGC---GGANANC 144 consensus_6769#1 ATGGATGATCACACTTGTGTTCTTTCTAGTTTATACTAATTTAATTTTATCTAAAAAAAC 202 ******** ** * ** * * * * * * * * consensus_6769#0 GGGTGGGAGCCGCCGGCGGAGTGGGCGGCGTGGGAG----AAGGAGTGGTACGGGAGCTA 284 consensus_6769#2 GGGTGGGANCCCCCGGCGGAGTGGGCGGCGTGGGAA----AANNANTGGTACGGGAGCTA 200 consensus_6769#1 TAGTATATGTAATNTTTGATTTGATTATCGTTTCAATTACAGGAAAAGAAATATAGATTG 262 ** * ** *** * * * * * * consensus_6769#0 CGACGCCGACGTGT-GCGCGC-TGGTGGGCGCCGTGCAGGCCTTCCTCATGAGCTCCCGC 342 consensus_6769#2 CCACCCCCACGTGT-GCGCGC-TGGTGGGCGCCGTGCAGGCCTTCCTCATNAGCTNCCGC 258 consensus_6769#1 TCAAATTAACATTTCGTCTACATGAATATTCCTTTGTATATGACAATTATGAATTACT-- 320 * ** * * * * ** * ** * * ** * * * consensus_6769#0 CCCGGCGTCGGCGTCGGGATCGTGGCAGCGGTGGCGGTGA-GCGTTCCGACCACCGCC-T 400 consensus_6769#2 CCCGGCGTCGGCGTCGGGATCGTGGCANCGGTGGCGGTGA-GCGTTCCGACCNCCNCC-T 316 consensus_6769#1 CCTACCATTGTTATCTCCATACAAAATGTGATTCTGACAATGCATTTTGACAAGTACTAT 380 ** * * * ** ** * * * * ** ** *** * * consensus_6769#0 TCGTCCTCGTCTCCGGCCTCCTCCATGCCTCCCAGTCTCTCCTCTCCAACCTCCAACACT 460 consensus_6769#2 TCGTCCTNGTNTCCGGCCTCCTCCATGCCTCCCAGTNTTTCCTNTCCAACCTCCAACANT 376 consensus_6769#1 TTGTCCAGGTGTATAGGTATAATTATTTTTTGGGCGACAAAGTTAATATTGTTCAAGCAC 440 * **** ** * * ** * * * * *** consensus_6769#0 AGAAGCTTAGCTTCCAAGCTAACCATGGATGATCACA-CTTGTGTTCTTTCTAGTTTATA 519 consensus_6769#2 ANAAGNTTAGCTTCCNAGCTAACCATGGATGATCNCN-CNTGNGTTCTTTNTAGTTTATA 435 consensus_6769#1 ATA-GCTACATTCTTTTGATAGC-----GTAATCTTAACTTATAATTCTGGTCCTCCAAA 494 * * * * * * ** * * *** * * * * * * * * consensus_6769#0 CTAATTTAATTTTATCTAAAAAAACTAGTATATGTAATGTTTGATTTGATTATCGTTTCA 579 consensus_6769#2 NTAATTTAATTTTATNTAAAAAAANTAGTATATGTAATGTTTGATTTGATTATCGTTTCA 495 consensus_6769#1 AAAACTTATAATTCTGAGAGAAGTTGAGAACTTGTCCTGT---ACCCCTTCACCG----A 547 ** *** ** * * ** ** * *** *** * * * ** * consensus_6769#0 ATTACAGGAAAAGAAATATAGATTGTCAAATTAAAAAAAAAAAAAAAAAAAAAAGAAAAA 639 consensus_6769#2 ATTNCAGGAAAAGAAA----------------AAAAAAAAAAAAAAAAAAA--------- 530 consensus_6769#1 AAATCAGAGATNTAAAC-----CATTTCTATTATTAAAAAA------------------- 583 * *** * *** * ****** consensus_6769#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 675 consensus_6769#2 ------------------------------------ consensus_6769#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||